Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1476 114 1e-20 seq5374 86.0 5e-12 >seq1476 Length=9414 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || ||||| || ||||| || || ||||| || | || | | || ||||||| Sbjct 9089 ACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCAAGCGTTCGTCCGTCTTC 9147 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || |||||||||||| | || ||||| || ||||| || || | || || || || Sbjct 9148 TAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 9207 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | |||||||| | || ||||| | |||||||| ||| Sbjct 9208 GATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTT 9267 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||||||||| || ||||| Sbjct 9268 TCCAGTCAAGGTTTTCACAAATATCTGCAT 9297 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTT 27096 ||||| ||| | |||||| ||||| ||||| ||||| || | || | |||| |||||| Sbjct 8860 TACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATC-CGCAAGCGTGCGTCCGTCTT 8918 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | || ||||||||||| |||| ||||| || || || || || | || ||||| || Sbjct 8919 CCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATCCCTTCTTTGTCCT 8978 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || |||| | || | ||| |||| | ||| ||||| | || |||| || Sbjct 8979 GGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTT 9038 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || || ||||| |||||||| Sbjct 9039 TCCCAGTCAGCGTCTTAACAAAAATTTGCAT 9069 >seq5374 Length=4546 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 || || || ||||| || ||||| || || ||||| || | || | | || ||||||| Sbjct 4417 ACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCAAGAGTACGTCCGTCTTC 4359 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || ||| | || ||||| || ||||| || || | || ||||| || Sbjct 4358 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTG 4299 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||||| | |||||||| | ||| || | || Sbjct 4298 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTT 4239 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTA 27263 || || || ||||||||||| || ||||| | || | ||||||| Sbjct 4238 TCCAGTAAGCGTTTTCACAAAAATCTGCAT-GGTGATTCAAATTTA 4194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904445311808