Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3351 159 4e-34 seq1503 158 2e-33 >seq3351 Length=46634 Score = 159 bits (176), Expect = 4e-34 Identities = 675/1050 (64%), Gaps = 37/1050 (4%) Strand=Plus/Minus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--ACTTTCGC 111109 ||| || ||||||||||| || | ||||| |||| |||||| ||| |||| || Sbjct 38856 ATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGC 38797 Query 111110 G-CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| || |||||| |||| ||||||| | ||| |||||||| ||||| || Sbjct 38796 TTCAGG---AATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGAT 38740 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 ||||||||||| | | |||| || | | ||| | | | ||| || ||| | || Sbjct 38739 TTTTGTGATTTCGTATAATTTTGCAAATTGAAA--TTC---TTTCTG-ATACACAAATTT 38686 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || | ||||| || ||||||||||| || ||| || | |||| |||||| | Sbjct 38685 TGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGAT 38626 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 ||||| || | ||| || | ||| || || | ||||| || || || Sbjct 38625 GATTTCACAGCAGAGATTGCTTGATCG---AATGGTTCCAAGATTCTGCTGATTGGATTT 38569 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 38568 ACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAA 38509 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGCCTCG 111463 ||| || ||| | | |||| ||| | | || ||| | | |||| Sbjct 38508 AATGGCAAACCACAATTGCTGGGCTTTGACAGT--CTTTCGGGCAATGTTTTGAGACTCG 38451 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTC-CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 |||||| || | || ||||| || || |||| | || | || | ||| |||| Sbjct 38450 TACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTC-TCATAAAGTCGTGGAGCCTC 38392 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||||| || || || || ||||| || || || || Sbjct 38391 GTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGG 38332 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||| || | |||| | ||||| | ||| ||| | || || || || Sbjct 38331 GATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACG 38272 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 || || || ||||| | ||||||||||||||| ||||| ||||| | ||| | ||| || Sbjct 38271 TAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCC 38212 Query 111703 CTTTCGACGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 || || |||| | ||||| || || || |||||| | || || || |||||||| Sbjct 38211 TTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCAT 38152 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 ||||| ||| |||| || ||||| ||||| |||||| | || ||| | | Sbjct 38151 TGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAAT 38092 Query 111820 ATCATGGATGTGC--ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 || |||| | | | |||||||| |||||||||||||| || |||||| | | Sbjct 38091 AT--TGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTC 38034 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || |||| ||| || || || | ||| | || || || || Sbjct 38033 AGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGAT 37974 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATA 111994 | || |||| || || || |||||||| || || || ||||| || || |||| | Sbjct 37973 AATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTT- 37915 Query 111995 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||| | || || || ||||| || | || | | || ||| |||||| Sbjct 37914 --TTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCG 37857 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGG 112084 | || || ||||| | ||| | |||||| Sbjct 37856 ACAGCCACTCGCATTATCATATGTTGTGGG 37827 >seq1503 Length=45688 Score = 158 bits (174), Expect = 2e-33 Identities = 307/449 (68%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || ||||| || || || |||||||| ||||| || || ||||| | || Sbjct 34308 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 34367 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||||| |||| | |||| ||||||||| |||||||| ||||| || || || | Sbjct 34368 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 34427 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| || | | | ||| || || ||| | |||||| ||| ||||||||| ||| Sbjct 34428 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 34487 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 |||| || || || || || || | |||| || || | ||| |||| ||| Sbjct 34488 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGCTGTTTT 34547 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 122970 |||| | ||| || |||||| | ||||||||| ||||| ||| || | || Sbjct 34548 TCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTT 34607 Query 122971 TCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || ||| ||| |||| || |||| || | || |||||| |||||||||||| | | Sbjct 34608 TC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CTG 34664 Query 123029 C-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 | ||||| | || ||| ||| ||||||||||| | |||||||| |||| Sbjct 34665 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 34724 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTC 123116 | || || || || | ||||||| || Sbjct 34725 ACGTGTTTGATAAAGTGTCTTTCATTGTC 34753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986593286400