Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1503 114 2e-20 seq3351 100 4e-16 >seq1503 Length=45688 Score = 114 bits (126), Expect = 2e-20 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 34308 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 34367 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 34368 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 34427 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 34428 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 34487 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 130266 || || || || || | ||||||| || | ||||| || || | | || || Sbjct 34488 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 34546 Query 130267 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT 130326 ||| | ||||||||||||||| |||| || | | ||||| ||| || | | Sbjct 34547 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 34606 Query 130327 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| || Sbjct 34607 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CT 34663 Query 130385 GC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATC 130422 || ||||| | || ||| ||| ||||||||||| Sbjct 34664 GCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 34702 >seq3351 Length=46634 Score = 100 bits (110), Expect = 4e-16 Identities = 314/482 (65%), Gaps = 7/482 (1%) Strand=Plus/Minus Query 119028 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 119087 || || || || ||||| || || || |||||||| || || | || | ||| ||| Sbjct 38360 TCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCT 38301 Query 119088 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 119147 ||| ||||| || ||||| ||| | |||| ||| || | ||||||||||||| Sbjct 38300 CGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGC 38241 Query 119148 CACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATAC 119204 || || || || || | || | ||||| || || | ||| | || | || || Sbjct 38240 CAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTAT 38181 Query 119205 CTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTC 119264 | || ||| | || || || ||||||||||||| || |||| || ||||| ||| Sbjct 38180 CGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTC 38121 Query 119265 CCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC--ATACCAATACCCCCTG 119322 || |||||| | || ||| | || || |||| | | | |||||||| || | Sbjct 38120 CCGCGAATATAACTGTTGGTGGAGC-GA-ATATTGGAAATACTGACGCCAATACCGCCAG 38063 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 |||||||||| || ||| || | | || || |||| || || ||||| || ||| Sbjct 38062 CCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCAT 38003 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | | | | | || || || ||| | ||| || | || || || || ||||| | Sbjct 38002 CTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAA 37943 Query 119443 GAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGG 119502 | || || || || || | || | ||| ||||| | || || || ||||| |||| Sbjct 37942 GCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGG 37883 Query 119503 CG 119504 || Sbjct 37882 CG 37881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618390487135040