Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3351 140 4e-28 seq1891 116 4e-21 seq1374 109 6e-19 >seq3351 Length=46634 Score = 140 bits (154), Expect = 4e-28 Identities = 302/448 (67%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||||| ||||||||| || || || || || ||||| || || ||| || || || Sbjct 37912 CAAAAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAA 37971 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || | | ||| | ||||| || ||||||||||| ||||| ||| Sbjct 37972 TTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTACGACACG 38031 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 || || | ||||| || || |||||| | || ||||| || || || || Sbjct 38032 CTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAAT 38091 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || | | | || || |||||||| || | ||||||| || || Sbjct 38092 ATTCGCTCCACCAACAGTTATATTCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCA 38151 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| || || ||||| |||| || || ||||| | || || ||||||||||| || Sbjct 38152 ATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGCGGTGGGAAGCGGAAA 38211 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||||| || || || || || ||||| |||||||| || || | |||||||| || || Sbjct 38212 GGGTCTTTTGCAATTTATCTAGAGCCCTGGCACGCGGATATCTTTGAGTTTCTGGAACTA 38271 Query 53624 CGTCTGAATCAGGGTGACGAA-GAGAT-GCGCTGCCGTGACCTGTTTACAGCTCTGTGGA 53681 ||| |||||| || | ||| || | ||| || || ||||| ||||| |||| Sbjct 38272 CGTAAGAATCATGGAAATGAACTCCATCGAGCT--CGAGATTTGTTTTATGCTCTTTGGA 38329 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGA 53709 | || || || || ||| || ||||| Sbjct 38330 TCCCCGATCTGTTTATGAAACGTGTGGA 38357 >seq1891 Length=72635 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| ||||| ||||| | ||| || ||||| || |||||| || || ||||| || || Sbjct 64914 CGTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTG 64973 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || | |||| ||| |||| || || | | ||| |||| || || Sbjct 64974 ACCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAAC 65033 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || ||||| || ||||| || |||||||| || ||||| ||||| Sbjct 65034 AATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACAATATCC 65093 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| || || ||||| ||| | || || ||||||||||| ||| | | || Sbjct 65094 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 65153 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| || || |||| |||||| ||||| Sbjct 65154 CTTCCGTTGAGATGTTTTCAACCCGTC 65180 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || |||| ||| |||||||| || ||||| ||| || || |||||||| Sbjct 64915 GTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTGA 64974 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || | || | ||| |||| || ||| ||| || |||| ||| ||| Sbjct 64975 CCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAACA 65034 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 || ||| || || ||||||||||| |||||||| || ||||| | || || || Sbjct 65035 ATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACA-ATATCC 65093 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 |||||||| || || ||||| || | || || |||||||| || || | | || Sbjct 65094 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 65153 Query 117544 CTTGCGCTGA 117553 ||| || ||| Sbjct 65154 CTTCCGTTGA 65163 >seq1374 Length=19501 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| || |||||| | || |||||||||||| Sbjct 1675 GTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTACCGAATTGT 1616 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||| || ||| || || || ||||| |||||||| || | Sbjct 1615 CCATTTGGAGACAATAGATTCGTATTATTACTTCCGGTAAAGTCTTGAGCCATATTAATG 1556 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||||||||| | || ||||| | || || || Sbjct 1555 ATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGATACATAACCG 1496 Query 117485 GCCAGCTGAGCCACCTTCATGTC 117507 || || || ||||| || || || Sbjct 1495 GCGAGTTGTGCCACTTTGATTTC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176436283200