Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1476 168 8e-37 seq5374 141 1e-28 seq2942 134 2e-26 seq234 102 9e-17 seq3351 91.5 2e-13 >seq1476 Length=9414 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || |||||||| | || || || || Sbjct 9070 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 9011 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||||| ||||| |||||||| || || |||||||||||||| Sbjct 9010 AGATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCA 8951 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||||||||||||| ||||| ||||| || || | || || || || || || || Sbjct 8950 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 8891 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || |||||||| || | |||||||| ||||| Sbjct 8890 CATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 8843 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || | || || || ||||| ||| | || || |||||| Sbjct 9298 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 9239 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || || ||||||||||| ||||||||||| || || Sbjct 9238 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 9179 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || ||||| ||||| || || | || || || || || || || Sbjct 9178 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 9119 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || | || | |||||||| |||||| Sbjct 9118 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGA 9070 >seq5374 Length=4546 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || |||||||| || ||||| || ||| | || |||||||| Sbjct 4209 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4268 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||| ||||| || ||||||||||| || ||| Sbjct 4269 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4328 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| || ||||| || || | ||||| || || || || || Sbjct 4329 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 4388 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || |||| | |||||||| |||||| Sbjct 4389 ATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGA 4436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || || || ||| | || || |||||| Sbjct 4436 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 4495 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || | |||| || ||||||| || || ||||||||||| |||||||| Sbjct 4496 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCC 4546 >seq2942 Length=30195 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 17398 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 17457 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| ||||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 17458 CGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 17517 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || ||| | ||||| | || || || || || || || Sbjct 17518 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 17577 Query 27585 TGTCCAAAA 27593 ||||||| Sbjct 17578 CATCCAAAA 17586 >seq234 Length=209331 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || ||||| || || || || |||| || | |||| ||| | ||| || Sbjct 198504 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 198563 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||| Sbjct 198564 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 198623 Query 27553 CTCGAGGATGATCGTACCCTA 27573 || || || | |||||| ||| Sbjct 198624 CTTGAAGACGGTCGTACTCTA 198644 >seq3351 Length=46634 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 80014 TGAATTGGCTTG-----GCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGC 80068 |||||||| ||| || ||| || || || ||||||||||| || |||||||| | Sbjct 39580 TGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGTCTTGAGAC 39521 Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGA 80128 | || ||||| |||| | ||||| ||| |||| || | || |||| | ||| Sbjct 39520 CTTTTTTCCATGCGTAGAAATGCATCGAAGTGAGTTTACTGACAGTCGGGTCGGCAATGT 39461 Query 80129 AGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 || || || || ||| |||||| ||| | || || ||||| || ||||| || | || Sbjct 39460 GAATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAA 39401 Query 80189 TTGACTTTTGTGGAATTTCCCATACTGT 80216 | | |||||| |||||||| ||||| Sbjct 39400 TCGCCTTTTGCTTGATTTCCCAAACTGT 39373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269166558080