Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2942 127 2e-24 seq5374 122 8e-23 seq1476 122 8e-23 seq234 82.4 7e-11 >seq2942 Length=30195 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || |||||||| || ||| | ||| Sbjct 17399 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 17458 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||||||||| ||||| || || ||||| ||| Sbjct 17459 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 17518 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 |||||||| || | ||| || ||||||||||| ||| | ||| || | | |||||||| Sbjct 17519 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC-GGCCGAACGCTCGCGGATTACAA 17577 Query 27167 CATTCAAAA 27175 ||| ||||| Sbjct 17578 CATCCAAAA 17586 >seq5374 Length=4546 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| || || || ||| | || ||| | ||||| || | | Sbjct 4207 CCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTT 4266 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | || || || ||||||||||||||||| || || || |||| Sbjct 4267 CAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATC 4326 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || ||| | || | ||| || |||||| | |||||| | || || | ||||||| Sbjct 4327 AGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACA 4386 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || || || || || || || || | ||| | || ||||| || Sbjct 4387 ACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAAT 4438 >seq1476 Length=9414 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || || ||||||| | ||||||||| | || Sbjct 9069 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 9010 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| || ||||||||||| || || || || || Sbjct 9009 GATACTATCGACAATGTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGACCAG 8950 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | ||||| |||||| |||||||| | || || | ||||||||| Sbjct 8949 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 8890 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | ||| |||| | ||| | || ||||| Sbjct 8889 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 8843 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || |||| ||| | ||||| || | || Sbjct 9297 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATCA 9238 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 9237 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 9178 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 || ||| | || | |||||| |||||| | |||||| | ||| || || || ||||||| Sbjct 9177 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGA-CGAACGCTTGCGGATTACAA 9119 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || || || ||||| | ||| | || ||||| || Sbjct 9118 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAAT 9068 >seq234 Length=209331 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| || ||||| ||| | | ||| ||||||| | ||||| || ||||||||| Sbjct 198513 ATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAGATTCAAGAC 198572 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || || ||||| ||| |||| | ||||| |||||| | |||||| Sbjct 198573 AAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAACTTGAAGAC 198632 Query 27144 AGT 27146 || Sbjct 198633 GGT 198635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886955399680