Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1476 120 2e-22 seq527 84.2 2e-11 >seq1476 Length=9414 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || ||||||||| |||||| | || || ||| | Sbjct 9070 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 9011 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || || ||||| ||||||||||| |||| || Sbjct 9010 AGATACTATCGACAAT--GTGAAGGCGAAAATCCAGGACAAAGAAGGGATTCCTCCAGAC 8953 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 |||||||| ||||||||||||| |||||| |||| |||| ||||| ||||| | ||||| Sbjct 8952 CAGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTG-CGGATTA 8894 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || |||||| || | ||| |||| | ||| | ||||| || Sbjct 8893 CAACATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 8843 >seq527 Length=46368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| ||| || || || | |||||||| || ||||||||||| || | || Sbjct 8259 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 8318 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | || | |||||||||||||| ||||| ||||| || ||| ||||| | || || || Sbjct 8319 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 8378 Query 28011 TGGCGG 28016 ||| || Sbjct 8379 TGGTGG 8384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355837314369768