Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5374 129 4e-25 seq1476 127 1e-24 seq2942 122 6e-23 seq527 84.2 1e-11 >seq5374 Length=4546 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || |||||| | |||||||| || | Sbjct 4209 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4268 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||||||||| | || || ||||| Sbjct 4269 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4328 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || |||||||| ||||||| ||| ||| | | ||||||||| Sbjct 4329 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 4388 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || || || ||||| Sbjct 4389 ATCCAGAAAGAATCAACGTTGCACTTAGT 4417 >seq1476 Length=9414 Score = 127 bits (140), Expect = 1e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || || | ||||| || || | Sbjct 9070 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 9011 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | |||| | ||||||||||| | || ||||| | Sbjct 9010 AGATACTATCGACAATGTGAAGGCGAAAA-TCCAGGACAAAGAAGGGATTCCTCCAGACC 8952 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| |||||| | | ||||||| Sbjct 8951 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACA 8892 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 8891 ACATTCAGAAAGAGTCTAC 8873 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || |||||||| || ||| | ||||| || || | Sbjct 9298 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATC 9239 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 9238 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 9179 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||| |||||||| ||||||| ||| || | | |||||||| Sbjct 9178 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 9119 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || || || Sbjct 9118 CATCCAGAAAGAATCAACGTTGCACTTGGT 9089 >seq2942 Length=30195 Score = 122 bits (134), Expect = 6e-23 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 23600 AATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||||||| ||||||||||||||| || || ||||| || ||||| |||||||| || Sbjct 17387 AACTACTTAAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAG 17446 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || || | ||||| | || ||| | || | || | || ||||| ||||| | Sbjct 17447 GTCGAATCATCCGACACGATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGAAT 17505 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || ||||||||||| || || || || |||||| |||| |||| || || | Sbjct 17506 TCCTCCCGACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCT 17565 Query 23778 AGGCGATTACAACATACAAAAAG 23800 | ||||||||||| ||||||| Sbjct 17566 CGCGGATTACAACATCCAAAAAG 17588 >seq527 Length=46368 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || || ||||||||| | || ||||| || |||||| ||||||| | || Sbjct 8259 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 8318 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || |||| ||||||||||| || ||||| ||| |||||| | ||| || | || || Sbjct 8319 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 8378 Query 23832 AGGAGG 23837 || || Sbjct 8379 TGGTGG 8384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985772858272