Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5374 134 3e-26 seq1476 132 1e-25 seq66 123 6e-23 seq21 123 6e-23 seq2 114 3e-20 seq2942 111 4e-19 seq25 109 1e-18 seq93 107 5e-18 seq3347 96.9 8e-15 seq10 84.2 5e-11 >seq5374 Length=4546 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | ||| Sbjct 4430 ACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGT 4371 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || |||||||| || || ||||||||||| || ||||| || || || ||||| || Sbjct 4370 ACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 4311 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| ||||| ||| ||| ||||| |||||||| | || || || || Sbjct 4310 TTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAA 4251 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||||| Sbjct 4250 AGTGATGGTCTTTCCAGTAAGCGTTTT 4224 >seq1476 Length=9414 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | || Sbjct 9076 ACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGT 9135 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || |||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 9136 TCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 9195 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || || |||||||| | || || || || Sbjct 9196 TTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAA 9255 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | |||||| Sbjct 9256 AGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 9298 >seq66 Length=598 Score = 123 bits (136), Expect = 6e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 7595 ttttcttttttGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAA 7654 |||| ||| | |||||||| ||| | || || ||||| |||||||| || | ||||||| Sbjct 598 TTTTTTTTATGGTTATGCCTGTTTTAATTGGAGGTTTTGGAAATTGGTTTATACCTTTAA 539 Query 7655 TGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTAC 7714 |||| || || ||||||||||||||||| || | || |||||||||||||| ||| | | Sbjct 538 TGATAGGAGCCCCTGATATGGCTTTTCCTAGAATGAATAATATAAGTTTTTGGTTATTGC 479 Query 7715 CGCCTTCCTTATT 7727 | ||||| ||||| Sbjct 478 CTCCTTCTTTATT 466 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| ||||| || |||||||||||||| | |||||||| ||||| || || Sbjct 68 TTCAGGATGACCGAAAAACCAAAATAAATGTTGATATAATATAGGATCACCTCCACCAGA 127 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 128 AGGATCATAAAAAGAAGTATTTAAATTTCTATCTGTTAATAACA 171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/162 (72%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 371385 TAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGA 371444 |||||| || ||||||| ||| |||| || | || ||| ||||| || |||| | ||| Sbjct 266 TAAACCTGGAGCTCTCATGTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAGA 325 Query 371445 AGATATACCTGCAAGATGTAAAC-TAAATATTGCTAAATCGACGGAACCGCCGGAGTGAG 371503 ||| || || | | |||||||| |||| ||||||||||| || ||| || || || | Sbjct 326 AGAAATTCCAGATAAATGTAAACCTAAAAATTGCTAAATCTACCGAAGGACCTGAATGTG 385 Query 371504 CTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 || ||| | ||| || || ||||| || || || |||| Sbjct 386 CTTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 427 >seq21 Length=1082 Score = 123 bits (136), Expect = 6e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 630 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 571 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAA 7845 | | || |||||| || |||||| ||| ||||||||| ||||| | ||||| ||| Sbjct 570 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTTGCGATCGTACTTTTCAGGCGGAG 511 Query 7846 T-ATTTACGCGTTAGCTTAATTAATATAAAAA 7876 | || ||||||||||| ||| || |||||| Sbjct 510 TGCTTAACGCGTTAGCTGTATT-ATCTAAAAA 480 >seq2 Length=862 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 415 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 356 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 355 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || || |||||| |||||| |||||||||||||||||||||||||||||| | Sbjct 98 GCTCCTTATACTGGTTGTACTATAGGTGAATATTTTAGAGATAATGGTAAACATGCTGTT 157 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| |||||| Sbjct 158 ATTTTTTATGATGATTTATCAAAACAA 184 >seq2942 Length=30195 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| ||||| || | ||| || || | ||||| || || || || | || || | || Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 17408 AAATCTGCATT 17398 >seq25 Length=250 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||| |||||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 151 AGGTGTCACAAAATTGAGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATGG 92 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 91 TAACATGATGTATAGGGTCTGACAC 67 >seq93 Length=746 Score = 107 bits (118), Expect = 5e-18 Identities = 84/98 (86%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 647 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 706 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATC 6862 |||||| |||| || ||||||| |||||||||||||| Sbjct 707 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATC 744 >seq3347 Length=16847 Score = 96.9 bits (106), Expect = 8e-15 Identities = 81/97 (84%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAAAC-GGCCCAAGTCTTCTAAAAG--GGCAG 6825 || |||| ||||||||||||||||||||| ||| ||||||| || ||||| ||||| Sbjct 16749 GAAAGAACGATCAGCCACATTGGGACTGAGAACCGGCCCAAACTTTTTAAAAAAAGGCAG 16808 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATC 6862 ||||| |||| || ||||||| |||||||||||||| Sbjct 16809 CAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATC 16845 >seq10 Length=749 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 371784 TTTTGGTAGGCTCTTTATCCTTAACTGGATTTCCGTTTTTGACCGGTTTCTATTCTAAAG 371843 |||| |||| |||||||| |||| |||||||| ||||| | ||||| |||||||||| Sbjct 488 TTTTAATAGGTTCTTTATCTTTAATAGGATTTCCTTTTTTAAGTGGTTTTTATTCTAAAG 429 Query 371844 AAGTAGTTTTAGAGATAGCATTTTCTAAGTTTTCGATTAATA-GtttttttATTTATTGA 371902 | || | ||||| ||||| |||||| |||||| ||| | || |||| |||||| Sbjct 428 ATTTAATATTAGAAATAGCTTTTTCT-AGTTTTAATATAACAGGTCATTTTGCTTATTGG 370 Query 371903 TTA 371905 ||| Sbjct 369 TTA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192442824494096