Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1503 221 1e-52 >seq1503 Length=45688 Score = 221 bits (244), Expect = 1e-52 Identities = 600/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 4244 ACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTC 4303 || ||||||| |||| ||||| || || || || || || || ||||| |||| Sbjct 33989 ACCAACACCAGATTTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTG 34048 Query 4304 TAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACT 4362 | ||||| | ||||| | ||||| ||||||| |||| || | || | || | Sbjct 34049 CAGAGAAATCATATCCATCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCC 34108 Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 || || | |||||| || || ||||| || || || || | ||| | | | Sbjct 34109 A-AGTGCATGTAACAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAAT 34167 Query 4423 TAATTCCAATTAATCTC-ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 | |||||||||| ||| || || || | | | | ||| |||||||| || | ||| Sbjct 34168 TCATTCCAATTAG-CTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACG 34226 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-A 4540 || || | || || | | || ||| | | |||||||| | || || | | Sbjct 34227 GCGTCGGAAATGATTGCATGAATAGAGCCTTCTGGAAGCTTATTTACCA-GTTTCGAGTA 34285 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 || | ||| ||||| |||||||| | ||||| || | || || || || || ||||| Sbjct 34286 CATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAA 34345 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 | ||| ||||| || |||| || || ||||||||||||| | ||||| || || Sbjct 34346 GCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGA 34405 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTT 4719 || || || ||||| ||||| ||||| ||||| | || | |||||| | ||| Sbjct 34406 GAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT 34465 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 || | | |||||| || ||||| | ||||| || |||||||||| ||||| | | Sbjct 34466 TGGATCGCA-CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAA 34524 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | ||| | ||| | ||||||| ||| |||| || || || || || | || Sbjct 34525 TCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACG 34584 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 ||||| ||| || |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct 34585 AATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTT 34644 Query 4900 CTGTTACTTGAACTTCGTTAC--AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 | | | ||||| || | | ||| || | | | ||||| || || || || || Sbjct 34645 CGGGGATCTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCATC 34702 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT-ACTGT--TCGTCAGGCTTAAG 5014 |||||||||||| || ||||| || || ||||||| || | | ||| | || Sbjct 34703 ACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA-- 34760 Query 5015 TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| || || | ||||| | |||||| | |||||||| || Sbjct 34761 -TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGC 34819 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || ||||| || ||||| |||||| |||| | || ||||||| || |||||| | Sbjct 34820 CTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCG 34879 Query 5135 GTT 5137 ||| Sbjct 34880 GTT 34882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427019496206072