Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3351 329 4e-85 seq1503 279 7e-70 >seq3351 Length=46634 Score = 329 bits (364), Expect = 4e-85 Identities = 1435/2246 (64%), Gaps = 52/2246 (2%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 ||| || ||||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 39552 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 39493 Query 76871 TGTCAGTTTGGAATAAC--TAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCG 76928 || ||||| | | || | || ||||| || |||||||| | || ||||| ||| Sbjct 39492 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 39435 Query 76929 ATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATA 76988 ||| | ||||||| ||| || ||||| | | ||| | |||||| |||||||||| Sbjct 39434 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 39375 Query 76989 GTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCA 77045 |||||| | || ||| | || | |||| | | ||||||| | |||||| | | Sbjct 39374 GTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGA 39315 Query 77046 TCTGATATAATTGTATTCTTTATATCATCAT-TCCACAATTTCCTCTCTGTTAAAACTCT 77104 || | ||| |||| | || | || ||||||| ||| |||| | || |||| Sbjct 39314 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 39258 Query 77105 A--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 77162 | ||||| || || ||| ||||||||||| | || | ||| || | || Sbjct 39257 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 39198 Query 77163 TTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTT 77222 || || | || || | ||| || || || | ||||||||| || || || ||| Sbjct 39197 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 39138 Query 77223 GGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGA 77282 ||||| || || | || ||| |||| || || || || | || ||||| | Sbjct 39137 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 39078 Query 77283 TATTTCCAATCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | ||||||||||| || | ||| || | || | ||| | ||| |||| | || Sbjct 39077 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 39018 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG--CTAGTT 77397 || |||| | ||||||| ||| | || || ||||| ||| | | | | || Sbjct 39017 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGA--GTTCCCGTGCCAATT 38960 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 | ||||||| || || |||| || ||||| ||||| | || ||||| || Sbjct 38959 CCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGC 38900 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 | || | | || ||||| ||| | | || | ||| | ||| || | || |||| Sbjct 38899 GAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAA 38840 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | || || ||||| |||| ||||| || |||| | || ||||| ||||| ||||||| Sbjct 38839 CGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAAT 38780 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 |||| | || || ||||| ||||||||| | ||| | ||| | || | || || Sbjct 38779 AATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATT 38720 Query 77638 TAAGAAAATCAAATCTTCCATCTATAACAAACATGTT--CAAAGCTATAGATGCTAGATT 77695 | ||| | |||| || ||| ||| | || || ||| || || || || | ||| Sbjct 38719 TTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAAATT 38662 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || ||||| || || || | || | || | || || || || ||||| || | Sbjct 38661 GCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGA 38602 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 | || || || ||||| || || ||| || ||| || | ||| || ||||| || Sbjct 38601 TCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCAT 38542 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | |||| || ||||| |||||||| || | ||| | || || || | ||| Sbjct 38541 ATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTGCTGG 38487 Query 77876 --TATCATAGATTTGTATCGC-CTCTCTCTT-----TCATATTGAGTATATAGCCGTTCA 77927 | | | || || ||| | | | || || || | ||||| | ||| Sbjct 38486 GCTTTGACAGTCTT---TCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCA 38430 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 ||||| |||||| |||| | || || || || || || | || ||| Sbjct 38429 AATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCAT 38370 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 || | || | || ||||||||||| ||||| || ||||| |||||| ||| | | Sbjct 38369 TCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAA 38310 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 ||||| | || ||| ||||||||| |||||| || || |||||||| | ||| Sbjct 38309 TCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATA 38250 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 || | ||||| || |||||||| ||||| | | || || || ||| || ||| Sbjct 38249 TCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGA 38190 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | |||| || |||| ||| | || | | |||||||| ||| || || || || Sbjct 38189 TCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTT 38130 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATT 78287 ||||| || || ||||||||| | | ||||||||| ||| | || || Sbjct 38129 CCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATA 38070 Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || || ||| ||| || || || || |||||| || ||||| || || || ||| Sbjct 38069 CCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATA 38010 Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 ||||| |||| | |||||||| || | ||| | || ||||| ||| Sbjct 38009 GAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCA 37950 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 || || | ||||||| |||||||||||| | |||| || | | | || ||||| Sbjct 37949 TTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 37890 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 | | | | || | | | || || || || || || || ||||| | |||||| || Sbjct 37889 AAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTTGT 37830 Query 78528 GGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 78587 || | |||| | || ||| | ||||| || ||||| |||| ||||||||| Sbjct 37829 GGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAG 37770 Query 78588 CCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTG 78647 |||||||||| ||| ||||||||| || ||||| | ||||| || |||||| Sbjct 37769 CCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAGAGCTTCTTTG 37710 Query 78648 TATTTGGTAACAATATCCATG-ACAGTAGTTG--AAATAATAGGAGATCGTACACCATT- 78703 | | ||||||| || ||| ||| | |||| | |||| |||| |||| | Sbjct 37709 TTCTCCATAACAAT-TCGATGCACA-TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTG 37653 Query 78704 -TTTAG-GATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTT 78761 ||| | | ||| | || |||||| || || ||||| || | ||| ||||| Sbjct 37652 GTTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGTA 37596 Query 78762 TCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGT 78821 | || |||| ||| || | ||| |||| ||||| | | | |||| ||||||||| Sbjct 37595 TTTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGT 37536 Query 78822 GTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881 || | || ||||| ||||||| || || || || || || ||||| || Sbjct 37535 GTGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGCCC 37476 Query 78882 TTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTC 78941 ||| | || ||| |||||| | |||| ||| ||||| || | || ||||| Sbjct 37475 GGATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGTTT 37416 Query 78942 AATCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTTG 79001 || || || | |||| | || || | |||||||| || ||| | || || || Sbjct 37415 AAGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTTTT 37356 Query 79002 CATCCATTTCGTTTAATAACGAACAT 79027 | ||| | ||||| || || |||| Sbjct 37355 CGTCCGTCACGTTTGATGACATACAT 37330 >seq1503 Length=45688 Score = 279 bits (308), Expect = 7e-70 Identities = 620/910 (68%), Gaps = 23/910 (3%) Strand=Plus/Plus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 |||||| || || |||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 34007 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 34066 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTC-TGAAATCAGTC 47973 | ||||| |||||| || | ||| | || | | || | | | || || || || Sbjct 34067 CCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATC 34125 Query 47974 TATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 48033 ||| || || || || || ||| ||||| |||||||||| || || | | Sbjct 34126 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 34185 Query 48034 CTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-A 48091 |||| || | || |||| ||| ||||||||||| | || || || || || | | Sbjct 34186 CTGGAAGTGAATCTCGTAC-AAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA 34244 Query 48092 TGT-TACCGTTTCCTCACTTGGTGGATACA-ACAAATGTTTAA-ACATTAAACATGCAAA 48148 || || | ||| || | | || || | | | | |||| | ||||||||| Sbjct 34245 TGAATAGAG---CCTT-CTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 34300 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 |||||||| || |||||||| | ||| || | || || ||||| || || ||||| Sbjct 34301 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 34360 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 | ||| ||||| || ||||||||||| | ||| ||||| || || || || ||||| Sbjct 34361 CAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTC 34420 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC-CACCGTT 48327 ||||||||||| || | ||| ||| | | ||| | || || ||| |||| || Sbjct 34421 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATT 34479 Query 48328 GT---GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 ||||| | || || || | || || || |||||||| || || | || || Sbjct 34480 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGC-ACAGTAAA 34538 Query 48385 AGtt-tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 | | ||||||| | |||||| | ||| ||||| || || | ||||| ||| ||| Sbjct 34539 TGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 34598 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || |||||||| ||||| || |||||||||||||| |||| ||||| | |||||| ||| Sbjct 34599 TGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACC 34658 Query 48504 TCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | | || |||| || | ||| ||||| || ||||||||||| || ||||| | Sbjct 34659 TCACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGA 34716 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || || || ||||| ||||| | | |||| ||| | | ||| ||||||||| | Sbjct 34717 AGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCA 34776 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 | || | | ||| | |||||| || |||||||| |||||||||||| ||||||| Sbjct 34777 TGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACA 34836 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAA 48741 | | ||| || ||| | ||| || || || | ||||| | || ||||||| | || Sbjct 34837 TGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAA 34896 Query 48742 GGATAGGTTC 48751 | | |||||| Sbjct 34897 GAAAAGGTTC 34906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694618575445760