Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3351 340 3e-88 seq1503 271 1e-67 >seq3351 Length=46634 Score = 340 bits (376), Expect = 3e-88 Identities = 1440/2248 (64%), Gaps = 56/2248 (2%) Strand=Plus/Minus Query 75406 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 75465 ||| || ||||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 39552 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 39493 Query 75466 TGTTAGTTTGGAATAAC--TCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCG 75523 || ||||| | | || |||| ||||| || |||||||| | || ||||| ||| Sbjct 39492 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 39435 Query 75524 ATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATA 75583 ||| | ||||||| ||| || ||||| | | ||| | |||||| |||||||||| Sbjct 39434 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 39375 Query 75584 GTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCA 75640 |||||| | || ||| | || | |||| | | ||||||| | ||| |||| | Sbjct 39374 GTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGA 39315 Query 75641 TCAGATATAATTGTATTCTTGATCTCATCAT-TCCACAATTTTCTCTCGGTTAAAACTCT 75699 || | ||| |||| | || | || ||||||| || |||| | || |||| Sbjct 39314 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 39258 Query 75700 A--AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATA 75757 | ||||| || |||||| ||||||||||| | || | |||| || | || Sbjct 39257 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 39198 Query 75758 TTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTC 75817 || || | || || | ||| || || || | ||||||||| ||||| || || Sbjct 39197 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 39138 Query 75818 GGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGA 75877 ||||| || || | || ||| |||| || || || || | || ||||| | Sbjct 39137 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 39078 Query 75878 TATTTCCAATCCCAAAGATCTGAT---GGTACAACATCCCAGAGATCGTATTGTAGAATT 75934 | ||||||||||| || | || || | || | ||| | ||| |||| | || Sbjct 39077 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 39018 Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCG---TCCTTTTCAGCTAGT 75991 || ||| | ||||||| ||| | ||||| | ||| ||| | || | | Sbjct 39017 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGAGTTCCCGT---GCCAAT 38961 Query 75992 TC---GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 || | || || || | ||| || |||| || ||||| ||||| | || || || Sbjct 38960 TCCATGGAA---GCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGC 38904 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 || | || | || ||||| ||| | | || | ||| | ||| || || || Sbjct 38903 TCGCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCT 38844 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 ||||| || || ||||| |||| ||||| || |||| | || ||||| ||||| || Sbjct 38843 TGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGA 38784 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTT 76228 |||||||| | ||| || ||||| ||||||||| | ||| | ||| | || | | Sbjct 38783 TAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTAT 38724 Query 76229 AGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGA--GCTATAGATGCTA 76286 | ||| ||| | ||||| | ||| ||| | || || | | || || || || | Sbjct 38723 AATTTTGCAAATTGAAATTCTT--TCTGATACACAAATTTTGACAATGCGATGGAAGCCA 38666 Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346 ||| || || || || || || | | | || | || || || ||| ||||| | Sbjct 38665 AATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGC 38606 Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 | | || ||||||||||| || || ||| || ||||| | ||| || |||| Sbjct 38605 TTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAA 38546 Query 76407 GAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 76466 | | | |||| ||||| || |||||||| || | ||| | || || || | | Sbjct 38545 GCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTG 38491 Query 76467 CTTTTATTATAGATTTGTATCGCTTCTCTCTT-----TCATATTGTGTATATAACCGTTC 76521 || || | | | | | | | || || || | | ||||||| || Sbjct 38490 CTGGGCTTTGACAGTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATC 38431 Query 76522 AAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA 76581 |||||| |||||| |||| | | ||| || |||||||| | || ||| Sbjct 38430 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 38371 Query 76582 CTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 || | || | || ||||||||||| ||||| || ||||| |||||| ||| | Sbjct 38370 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 38311 Query 76642 ATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701 |||||| | || | | ||||||||| |||||| || || || ||||| | || Sbjct 38310 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 38251 Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT-CGTTTATTACCTCCCT 76760 ||| | ||||| || |||||||| || | || || |||| | || || ||| || | Sbjct 38250 ATCCGCGTGCCAGGGCTCTAGATAAATTG-CAAAAGACCCTTTCCGCTTCCCACCGCCTT 38192 Query 76761 GATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATG 76820 |||| | |||| || |||| ||| | || | | |||||||| ||| || || || Sbjct 38191 GATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAAC 38132 Query 76821 TACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTA 76880 | ||||| || || ||||||||| | |||||||| |||| | ||| | Sbjct 38131 TTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAA 38072 Query 76881 TTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTA 76940 | || || ||| || || || ||||| |||||| ||||| || ||||| || | Sbjct 38071 TACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGA 38012 Query 76941 TACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 77000 || |||||| |||| | |||||||| || | ||| | || ||||| | Sbjct 38011 TAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCG 37952 Query 77001 CATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTT 77060 |||| || | || |||| |||||| || || | |||| || | | | || |||| Sbjct 37951 CATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTT 37892 Query 77061 CAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCT 77120 | | ||| || || | || | || || || || ||||| || ||||| | |||||| | Sbjct 37891 CCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTT 37832 Query 77121 GAGGTCGTTCTACAGTCTTAT-TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 | || ||||| ||| ||| | ||| | ||||| || ||||| |||| ||||||| Sbjct 37831 GTGGGCGTTC-ACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTA 37773 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCC 77239 || |||||||||| ||| ||||||||| || ||||| | ||||| || || Sbjct 37772 AAGCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAGAGCTTCT 37713 Query 77240 TTATATTTGGTAACAATATCCATG-ACAGTGGTAGAAATAATTGGAGATCGTA-TTCCAT 77297 || | | ||||||| || ||| ||| | | | || | ||||| ||| || | Sbjct 37712 TTGTTCTCCATAACAAT-TCGATGCACATCGTTGGCGATTAATGGAGCGGGTACTTTGGT 37654 Query 77298 --TTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 ||| | ||| | || |||||| || || || || || | ||| ||||| Sbjct 37653 GGTTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGT 37597 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCA-TAGTCAGGATGTT 77414 | || |||| ||| || | || |||| |||||| | | ||| | | || ||||||| Sbjct 37596 ATTTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCA-ATTTGGAGAAATCGGGATGTT 37538 Query 77415 GTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 |||| ||||| ||||| ||||||| || || || ||||| || || || | Sbjct 37537 GTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGC 37478 Query 77475 CGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGT 77534 | ||| | || ||| |||||| | ||||| || ||||| || | || |||| Sbjct 37477 CCGGATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGT 37418 Query 77535 TCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCT 77594 | || || || | |||| | || || | |||||||| || || |||| || | Sbjct 37417 TTAAGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTT 37358 Query 77595 TACATCCATTTCGTTTAATGACGAACAT 77622 | | ||| | ||||| ||||| |||| Sbjct 37357 TTCGTCCGTCACGTTTGATGACATACAT 37330 >seq1503 Length=45688 Score = 271 bits (300), Expect = 1e-67 Identities = 617/909 (68%), Gaps = 23/909 (3%) Strand=Plus/Plus Query 46345 TATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 46404 ||||| || || |||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 34008 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 34067 Query 46405 AAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTC-TGAAATCAGTCT 46463 | ||||| ||||||| | | | ||| | || | | || | | | || || || || Sbjct 34068 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATCG 34126 Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || || || || || ||||| |||||||||| || || | ||| Sbjct 34127 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGAC 34186 Query 46524 CGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCG-AT 46581 || || | || |||| ||| |||||||| || | || || || || || || | || Sbjct 34187 TGGAAGTGAATCTCGTAC-AAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 34245 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAA---CATTAAACATGCAAAA 46638 | | | | || ||| | | | | |||| | ||| | ||||||||| Sbjct 34246 GA-ATAGAGCCTTC---TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 34301 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 |||||||| || |||||||| | ||| || | || || ||||| || |||||||| Sbjct 34302 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 34361 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||| || || || ||||||||||||| ||| ||||| || || || || ||||| Sbjct 34362 AATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCG 34421 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC-CACC-TTT 46816 || ||||| || || || | ||| ||| | | ||||| || || ||| |||| ||| Sbjct 34422 ACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATTT 34480 Query 46817 GA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||||| | || || || | || || || |||||||| || || | || || Sbjct 34481 CAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGC-ACAGTAAAT 34539 Query 46875 Gtt-tttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 | | ||||||| |||||| | |||||||| || || | ||||| ||| || | Sbjct 34540 GCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 34599 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || ||||| || || || |||||||||||||| |||| ||||| | ||||| |||| Sbjct 34600 GTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCT 34659 Query 46994 CTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 | | | || |||| | | ||| ||||| || ||||||||||| || ||||| || Sbjct 34660 CACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAA 34717 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGAT 47111 ||||| || ||||| ||||| | | |||||| | | | ||| ||||||||| || Sbjct 34718 GGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCAT 34777 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 || | | ||| | |||||| || ||||| || ||||||||||| |||||||| Sbjct 34778 GTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACAT 34837 Query 47172 ATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 47231 | ||| || ||| | ||| |||||||| | ||||| | || ||||||| | ||| Sbjct 34838 GTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAAG 34897 Query 47232 TATAGGTTC 47240 | |||||| Sbjct 34898 AAAAGGTTC 34906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712882854842880