Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1476 190 4e-43 seq5374 170 4e-37 seq2942 168 1e-36 seq3539 147 5e-30 seq527 114 3e-20 seq234 98.7 2e-15 >seq1476 Length=9414 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || ||||| |||||| ||||||||||| || ||| Sbjct 9071 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 9130 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || || ||||||||||| ||||| ||||||| |||||| || ||| ||| Sbjct 9131 AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGA 9190 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || |||||||| || | |||||| Sbjct 9191 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGACT 9250 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||| || || || || ||||| || || || |||||||||||| Sbjct 9251 TCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 9298 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||||||||| | ||| ||||| || |||||||| || || Sbjct 8842 ACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGC 8901 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || || || |||||||| |||||||| || | |||||| ||||| || Sbjct 8902 AAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGG 8961 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||| ||||| || || || || | |||||||| || |||| ||| || Sbjct 8962 AATCCCTTCTTTGTCCTGGATTTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCAC 9021 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | || || || || || |||| |||||||| || || |||||| Sbjct 9022 TTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 9070 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || | || ||||| |||||| || |||||||| || ||| Sbjct 9299 CCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGCA 9358 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||||| || || || ||||||||||| || || ||||||| |||||| || ||| Sbjct 9359 AGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCA 9412 >seq5374 Length=4546 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || | || ||||| |||||| ||||||||||| || ||| Sbjct 4435 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 4376 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || ||||||||||| || || ||||||| |||||| || ||| ||| Sbjct 4375 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 4316 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| ||||| || ||||| ||||||| ||||| |||| || ||| Sbjct 4315 ATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 4256 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | || || || || |||||||| Sbjct 4255 TCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4209 Score = 93.3 bits (102), Expect = 9e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || |||||||| |||||||| || || ||| | || ||||||||||| | ||| Sbjct 4546 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCG 4487 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| | ||| || || || || |||| |||||||| || || |||||| Sbjct 4486 ACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 4436 >seq2942 Length=30195 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || || ||||| ||||| ||||| | |||||| || || || | Sbjct 17588 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 17529 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 17528 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 17469 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| || | |||||| || |||||||| || || || || | ||||| |||| Sbjct 17468 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 17409 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 17408 AAATCTGCATT 17398 >seq3539 Length=84347 Score = 147 bits (162), Expect = 5e-30 Identities = 688/1065 (65%), Gaps = 53/1065 (5%) Strand=Plus/Plus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 ||||| |||| |||||||| ||||| | | | ||| || || || ||||| | |||| Sbjct 20568 CAAGTAATTCCTTGTCTTCTCCGGATTGAAATCTCCACTGAATATATTGATTTGCAGTCA 20627 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 || ||||| | |||||||| ||||| |||| |||||| || || |||| || | Sbjct 20628 GATCGAGATGTGCTTCGATGTGATGGAATGCGTTCTGTGCAACATAGGCAAATCGTAAGC 20687 Query 316274 TTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGA 316333 ||||||| ||||| || | || | |||| |||| | || || |||| || || | Sbjct 20688 TTGGATGTTTCCACACAGTTCCACTCGTAGGCTCCACTTCACCAGTCAGCATCTTGATCA 20747 Query 316334 GAGTACTTTTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGC-GATACC 316392 ||| |||||| || || ||| |||| ||| |||| | || |||| | || Sbjct 20748 AGGTAGATTTTCCTGCTCCATTTGGTCCCAACACAGCGATTC--GACTTGACAAGGCACA 20805 Query 316393 TGGG-CATTCACGTTGTCGA-AGACCAGTTTGTC-CGTCCCAGGATACTTGAA--ACCCA 316447 | | || | || || |||| ||||||| ||||| |||||| || | | | | Sbjct 20806 AGTGACAGAGATATTACTGATAGACG-GTTTGTCTCGTCC-AGGATAAGTGTATGAGCAA 20863 Query 316448 CCCCGC-GAAGCTTCATGATGGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGG 316504 | | || | | || ||| || | ||| ||||| | | ||||| || | Sbjct 20864 TTCGTCAGACGGATAAT--TGGTTTACCCTTGTTCT---TGATATCTGCAAGAAAACCCG 20918 Query 316505 GTTCGGGGAATTTCCAC--GTAGTCTTCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTC 316562 |||| || || || | | | | || || | | |||||||||| | || Sbjct 20919 GTTCAGGAAACTTGAAGTGGAATAATGCGGCTT--CCAATTCGTAGTAACTTCTGGCCTC 20976 Query 316563 GGGACGCTTC---TTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTT 316619 || |||| || || || || |||| ||| ||||| ||| |||| ||||| | Sbjct 20977 AGG---CTTCACTTTGACAAACTCTGACAAATTACCTTTGTACGTCTTGAGCTTGCGT-- 21031 Query 316620 GGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATAC 316679 | |||||| || | || ||||| ||| ||| | ||| |||| ||||| ||||| Sbjct 21032 -GCTTCGTAGTGAACAATGTTCGTACAAACATGATCCAAGAATCCAGGGTCGTGGGATAC 21090 Query 316680 AATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGA 316739 ||||| || | |||| || || || ||||| ||||||| |||||| Sbjct 21091 AATCATACTGGTAACGTTGGGTAAATTATTCAAATAGTTTTCCAGCCAGGCGACATTCTT 21150 Query 316740 CACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGC 316799 ||| |||||||| || ||||| ||||| || || | | || | || || ||| || Sbjct 21151 TACATCGAGATGGTTCGTAGGTTCATCAAGAAGCAGAACATCAGCTTGCATCAACATGGC 21210 Query 316800 GCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCGGGGCAGATTG 316859 || ||||| | |||||||||||||| || || || | || | ||| | ||| Sbjct 21211 ACGAGCGAGTTCTAGCTTCATTTTCCATCCACCCGATAAAGATGAGACCGGTAAATGTTG 21270 Query 316860 GCGCTCAACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGAC--CAT 316917 ||| || || || || | || || || || | || ||| || ||| Sbjct 21271 CATTTCATCAGTGAACCCGAC-GCTT---GA-TAAAC-------TATCGCGA-ACTTCAT 21317 Query 316918 ---GTGTT--TTCTTTAACTTGGTCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAG 316972 ||| | |||||| | | || ||| ||||| || | || || | | Sbjct 21318 CTCGTGGTACTTCTTTCAACTCTTCATCACAAAACATGAATTCTATGACAGGAAGCATCG 21377 Query 316973 ATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGA 317032 ||| || | | | | ||| || ||| | |||| || || ||| || | ||| | Sbjct 21378 CTTCAGAAGCCTGCAAATTATGTTCGACAAACACAGTCTTTAGCTCATCTTTAGACGGAA 21437 Query 317033 ACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA-CCATTG 317091 | ||||||| || ||||| | || || |||||||| || || || || ||| ||||| Sbjct 21438 ATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACC-GCATCCATTT 21496 Query 317092 GGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGA 317151 || || || |||||||| |||| ||| |||||| | || |||| ||||||||| ||| Sbjct 21497 GGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTTCAGTAGA 21556 Query 317152 ATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||||||| |||| |||||||||||||| ||| || ||| Sbjct 21557 ATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 21601 >seq527 Length=46368 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | || || ||||||||||||||||||||||| ||||||||||| || || Sbjct 8385 ACCACCACGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGGATGTTGTAATCCGC 8326 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||||||||| ||||| || | ||| |||||||| || Sbjct 8325 TAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 8266 Query 282992 AATACC 282997 |||||| Sbjct 8265 AATACC 8260 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| |||||||| || || ||||||| || || | | || || Sbjct 8208 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 8149 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| |||||||| || || |||||||| Sbjct 8148 TCCAATGTGATTGTCTTCCCCGTTAAAGTCTTGACAAAAATCTGCAT 8102 >seq234 Length=209331 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| || | ||||||||||||| ||| Sbjct 198643 AGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGA 198584 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| || || | || || ||||||| | ||| || Sbjct 198583 ATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTAC 198525 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||| || || || || || Sbjct 198524 TTCGAGTGTAATTGTTTTTCC 198504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046661628774736