Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1503 269 3e-67 >seq1503 Length=45688 Score = 269 bits (298), Expect = 3e-67 Identities = 634/940 (67%), Gaps = 28/940 (3%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATT-TCACTGCTTTATCACTATTCAT-AACACCCATT 23217 ||| |||||| ||||||||||||| | || |||| || | || |||||| | Sbjct 33944 TTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCTTTG-CAG-AGACACCAACACCAGAT 34001 Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 || |||||| ||||| ||| | || ||||| ||||| || || | | || || | Sbjct 34002 TTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATA 34061 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTT-TAA 23336 ||||| | ||||| |||||||||| | ||||| | | | | || | | | ||| Sbjct 34062 TCCATCCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACGCCAAGTGCATGTAA 34120 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 | | ||| || ||||| || || ||||||| ||||||| | || || || ||||| Sbjct 34121 CAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAG 34180 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | ||||||| | ||| || ||| || ||| ||| ||| || || ||| || Sbjct 34181 CTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGAT 34240 Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA--ACAATAAACATGCA 23514 | | |||| |||| | | | ||||| | | | ||| | ||||||| Sbjct 34241 TGCATGAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCA 34298 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || ||||||||||| |||||||| | ||| || | ||||| ||||| | ||| ||| Sbjct 34299 AAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGC 34358 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAAAATACC 23633 || ||||||||||| || | ||||||||| | |||| ||||||||||| || || || || Sbjct 34359 ATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCC 34417 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA---ATCAGAAAT 23690 || || ||||||||||| || | | | |||| | |||| | ||| | Sbjct 34418 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA--- 34474 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATT--TTACACACTCAATTGTTTCAATTGCTTTT 23748 |||||| | ||| | || || ||| | || ||| ||||||||||| || Sbjct 34475 CCATTTCAACGCCCATTGTGCTTT--ATTGGTAACGCACGGGATTGTTTCAATCGCGC-- 34530 Query 23749 AAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | || ||| | || |||| | |||| | || ||||||||||| | ||| |||| Sbjct 34531 -ACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATAC 34589 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 | ||| || || |||||||| || ||||| ||||| || ||||| |||| |||||| | Sbjct 34590 ACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGG 34649 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||| ||| | || | | || | |||||| || ||||| |||||||| || Sbjct 34650 ATCTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCT 34709 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 |||||||| || | || | ||| ||||| |||||||||| |||| || ||| Sbjct 34710 GCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAG 34769 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||||| || || | ||||| | ||| || | |||||||| |||||| || | Sbjct 34770 TCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTC 34829 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATA 24085 |||||||| |||||| ||| |||||||| ||||||| Sbjct 34830 TTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATA 34869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521450296417600