Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq29 116 8e-21 seq3375 104 5e-17 seq4962 93.3 9e-14 seq90 91.5 3e-13 seq2240 84.2 5e-11 >seq29 Length=140563 Score = 116 bits (128), Expect = 8e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 319854 AGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGC 319913 ||| || || ||||| || |||||||| | || || | |||||| ||||||||||| Sbjct 71100 AGACGGAAATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACCGCA 71159 Query 319914 CCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTT 319973 || ||||| ||||| ||||| || || | ||| | |||| ||||| | |||||| Sbjct 71160 TCCATTTGGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTT 71219 Query 319974 CAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||| ||||| | |||||||| |||| ||| || ||||||| ||| |||||| Sbjct 71220 CAGTAGAATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 71271 >seq3375 Length=231 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| |||||||||||| |||||||||| ||||| ||||||| |||||||||||||||| Sbjct 172 TTGCCTGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGA 113 Query 165768 GCCCCACGATGGGCA 165782 ||||||| |||||| Sbjct 112 TCCCCACGGTGGGCA 98 >seq4962 Length=163 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 64 GCCTGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 5 Query 165770 CCCA 165773 |||| Sbjct 4 CCCA 1 >seq90 Length=79489 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| |||||||||||||||||||||| | ||||||| | ||||||||||||||||| Sbjct 79399 TGCCTTTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAG 79340 Query 165769 CCCCACGATGGGCAT 165783 ||||||| |||||| Sbjct 79339 CCCCACGGAGGGCAT 79325 >seq2240 Length=788 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 64 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 5 Query 165771 CCAC 165774 |||| Sbjct 4 CCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057753305622080