Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq23 260 2e-64 seq271 214 2e-50 >seq23 Length=155023 Score = 260 bits (288), Expect = 2e-64 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 36397 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 36398 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 36456 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || |||||||| || ||||||||||| | | ||||||| || | ||| Sbjct 36457 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 36516 Query 24306 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 36517 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 36575 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | | || | ||||||| | |||||| | |||||||||||||| | Sbjct 36576 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 36635 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| |||||| || || ||||| || || |||||||||||||| || |||| ||| Sbjct 36636 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 36695 Query 24482 CTCGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 |||| ||||| || || | | ||| || | || | ||||||||| || ||||| Sbjct 36696 TTCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCA 36753 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 |||||||||||||| || ||||| || ||||| ||||| | | |||| | | || Sbjct 36754 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA 36813 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 36814 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 36873 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 36874 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 36933 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTC 24745 || ||||||| | ||| | ||||| Sbjct 36934 TTCGGATTTTCTCGAAGAAAAGGTTC 36959 >seq271 Length=35139 Score = 214 bits (236), Expect = 2e-50 Identities = 1023/1619 (63%), Gaps = 14/1619 (1%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 29952 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 30011 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 30012 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 30071 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 30072 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 30131 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||| ||| | || | ||| | || | | ||| ||| | ||||| | | Sbjct 30132 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATTCTT--T 30189 Query 53685 CTATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || |||| | || || |||||| || || |||| ||| || || || || || || | Sbjct 30190 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 30249 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 30250 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 30309 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| || ||||| || || || ||||| || | ||||| || || ||||| Sbjct 30310 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 30369 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||| || | ||| || ||| | | || || | | | | | || Sbjct 30370 CTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTT 30429 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||| | ||| || ||||| ||| |||||| | | | || Sbjct 30430 TTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAAGTCG 30489 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || | |||||| | || ||| ||| || || | ||| ||||||||||| Sbjct 30490 TGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAA 30549 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||||||||| ||| | ||||| | || ||| || ||||| Sbjct 30550 CAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATG 30609 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| || || || ||| | | ||||| | ||||| || || | || || | Sbjct 30610 ATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGC 30669 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||| || || || ||||| | ||||| ||| |||| ||| | || Sbjct 30670 AAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACAC 30729 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | |||||||| ||| ||||| || ||||| |||||| ||||| || | Sbjct 30730 CCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGT 30789 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||||||| ||| | || || || || ||| || || || | || || Sbjct 30790 GGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACA 30849 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | |||| | ||| || || ||||| || ||| |||||| |||| | ||||||||| Sbjct 30850 TTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACA 30909 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | |||| | ||| ||||||||||| || | || |||| || |||||||| Sbjct 30910 CGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAA 30969 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | | | ||||| || | | | | ||| | || | || || || Sbjct 30970 GAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTAT 31029 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||||| ||| || || || | |||| | || || | Sbjct 31030 GCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCACACG 31089 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || || || ||||| |||| ||||||||| |||||||||| ||| |||||||| || Sbjct 31090 CAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 31149 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||||| | || ||||| || || | | |||| | || ||| || | Sbjct 31150 ACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACATCGT 31208 Query 54703 TG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 || | |||| |||| | ||| ||| | || | || |||||| Sbjct 31209 TGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA---T 31264 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || |||||| || | ||| ||||| | ||| |||| ||| || | || |||| | Sbjct 31265 TGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAATTCGA 31324 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || | ||| |||| ||||||||||| | || ||||| |||| |||| | Sbjct 31325 GCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCC 31384 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 54937 | ||||||||| || || || || ||| | || || || ||| || | Sbjct 31385 AATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTGAGAT 31444 Query 54938 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 54997 |||| | ||||| | | || ||||||||| || || | |||| | || || | Sbjct 31445 ATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCGCGCA 31504 Query 54998 GTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || || |||| ||| || ||| | ||||| |||||| ||||||| Sbjct 31505 GTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACATTTT 31563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 52898 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 29399 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 29456 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 53015 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 29457 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 29516 Query 53016 TTTTATA 53022 |||| || Sbjct 29517 TTTTGTA 29523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593682889351680