Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq271 210 2e-49 seq23 172 5e-38 seq226 93.3 4e-14 >seq271 Length=35139 Score = 210 bits (232), Expect = 2e-49 Identities = 1159/1835 (63%), Gaps = 45/1835 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| ||||| || ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | ||| | | |||| | | |||| | ||| | || ||||||||| || Sbjct 29399 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 29458 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCAT----CGACATTTCCCATAC 22320 |||||||||||||||| ||||| | | ||| ||| | | |||||||| || Sbjct 29459 TACGCTCCTCGATCGGCAGCCATGTCCA-AAAT---CGCCTTTTGCTTGATTTCCCAAAC 29514 Query 22321 GGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || |||||| || | | | ||| || |||| | || ||||| ||| Sbjct 29515 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCG 29574 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGT-TCCACAAACCGATGGCGGTCAAATCTT 22439 || | | | ||| ||| || ||| | | |||||||| || | | | |||| Sbjct 29575 ATCGCGAAGGATTTGATTCCGAA-CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT 29633 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | |||| ||| || | | ||| || || | | |||||| || | | | |||| Sbjct 29634 CCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGT 29693 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| |||||||| |||| ||| || || || || || ||||| || || ||||| | Sbjct 29694 TGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTG 29753 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGC 22618 ||||||| || | ||| | ||||||| | ||||| | | | || ||| || | | Sbjct 29754 GCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTA-CTTGCTCTTTCAAC 29812 Query 22619 ATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | ||| ||||| || |||| || | || | ||||||||| |||| || Sbjct 29813 TGCTTCCAATCCCATCGACCGGAATCGGGAATGAC---CTGCCACATATCAAATTGAAAG 29869 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAG 22734 | || ||||| | || || | || | |||||||| || | || || || | Sbjct 29870 ATACCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCC-GAGTTCCCGTGCCAA 29928 Query 22735 TTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 ||| | || |||| ||| || |||| || || || || |||| ||||| | || Sbjct 29929 TTCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTC 29988 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 | || || |||||| | || | || ||||| | |||| || || | ||| || Sbjct 29989 GCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTG 30048 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATA 22914 |||||| || || |||||||| | | | |||| ||||| ||| || || | ||||| Sbjct 30049 AACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATA 30108 Query 22915 CCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || || |||| | ||| | || || ||||| || || Sbjct 30109 ATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAA 30168 Query 22975 NNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCA 23032 |||| | ||| | | ||| ||||| | ||||| ||||| || || Sbjct 30169 TTTTGCAAATT--GAAATTCTTTCTGATAC-ACAAA--TTTTGACAATGCGATGGAAGCC 30223 Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGA---CGTGTACTCTACAATTTCGGTACATAGA 23089 | ||||||||| |||| | |||||||| | |||||| | ||||| || ||| Sbjct 30224 AAATTGCATACTGCCA---CTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGA 30280 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||||| | || || || | ||| ||| ||| ||| ||||| || | || ||| Sbjct 30281 TTGCTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTG 30340 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || ||||| |||||||| || ||||| | ||| || | || || ||||| | Sbjct 30341 TAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACAATTGC 30400 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | ||| ||| || | || || ||||||||||| || ||||| || Sbjct 30401 TGGGCTTTGACA-GTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATC 30459 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||||| || | || || | || | | ||||||| | | |||||| Sbjct 30460 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 30519 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || | ||| || ||| ||||||| ||||| || ||||| ||||| || |||| Sbjct 30520 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 30579 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || ||||| | |||| ||| || || | Sbjct 30580 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 30639 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 ||||| ||||| ||||| || |||| ||||| | || | ||| ||||| || Sbjct 30640 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTG 30699 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| ||||| || || |||| ||| |||| | ||||| || || | || || || Sbjct 30700 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 30759 Query 23569 GCCGCCTACG-CCCGCCACACTCGAACCTTTTGCT----CGAACGTTGTGAACGTGGAAA 23623 | | | || ||||| | | | || ||| | |||| ||| || || Sbjct 30760 TC--CATTCGTCCCGCGAATAT---AACTGTTGGTGGAGCGAATATTGGAAATACTGACG 30814 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || | || || || ||| ||||||||||| |||||||| ||||| Sbjct 30815 CCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCG 30874 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| || |||| | | | | |||||||| || | ||| | | ||||| Sbjct 30875 TCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTT 30934 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| || ||||| | || ||||||||| | | ||||| | | ||| Sbjct 30935 CCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATAC 30994 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || | |||| || | | |||| |||||| |||| || || ||||| ||||| Sbjct 30995 GTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATA 31054 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| || | || | || || | |||||||| || | || ||| Sbjct 31055 TGTTGTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTT 31114 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 ||||| ||||||||||| || | |||||| | ||| Sbjct 31115 TTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 31149 >seq23 Length=155023 Score = 172 bits (190), Expect = 5e-38 Identities = 588/895 (66%), Gaps = 50/895 (6%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 36929 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 36870 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 36869 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 36810 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| || ||| | ||||| |||||||||||||| || || || || |||| Sbjct 36809 TCGGACAAT--GAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 36752 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGC 57775 | ||||| || || ||| | | | | || ||||| || | || || | | || || Sbjct 36751 GAATTGTCAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGC 36694 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||||||||||||| | || || ||||| | || || ||| |||||||| | Sbjct 36693 TCGATGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 36634 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAAC-GACGAGAAACGTAGACTGTTCAACGCGAT 57892 | | || ||||| ||| | || || |||| || | | | | ||||| |||||| Sbjct 36633 ATTGATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGT---GCGCGAT 36577 Query 57893 CGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAAA 57947 |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| || Sbjct 36576 TGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAA 36518 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 || ||| |||| || || || | | || || || ||||||||||| || || Sbjct 36517 AG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTT 36462 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || || ||| | ||||||||| |||||||||| || ||||||| || || Sbjct 36461 TTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACT 36403 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||| | || || || || || || ||| ||| ||||| || || Sbjct 36402 TTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCT 36343 Query 58127 AATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACCG 58185 |||||||| | | || ||||| | | | || || || || | || || ||| Sbjct 36342 GATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCCG 36284 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || |||||| | || ||||| || | || || || | | | || | Sbjct 36283 ACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAA 36224 Query 58246 TGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTC 58301 |||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 36223 TGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACAT 36168 Query 58302 GAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGAA 58354 | || ||| |||||| ||| | |||| ||||| ||||| | ||| | Sbjct 36167 GCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGGA 36115 Query 58355 TCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 | |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 36114 TATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 36060 >seq226 Length=41712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 24304 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 24245 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 24244 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 24185 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 24184 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 24149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737336030720