Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq23 242 5e-59 seq271 228 1e-54 >seq23 Length=155023 Score = 242 bits (268), Expect = 5e-59 Identities = 433/625 (69%), Gaps = 9/625 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||||| |||||| || || || || || || || || | ||| || | || || |||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 36397 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | ||||| ||||| | || || || || ||||||||||| || ||||||||||| Sbjct 36398 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGG 36457 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | || ||||||||||| || || |||||||| | | ||| ||| || | ||| | Sbjct 36458 AGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACT 36517 Query 33754 CATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || ||| ||| ||| | ||||| | || || || | || || || || ||||| Sbjct 36518 T-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCA 36576 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | | || | ||||||| | |||||| | || ||||| ||||| | Sbjct 36577 ATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAAC 36636 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||||| || || ||||| || || || ||||||||||| || |||| ||| Sbjct 36637 GAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCT 36696 Query 33930 TCGGTAATCTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| ||||| || || | | ||| || | || | ||||||||| || ||||||| Sbjct 36697 TCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCAT 36754 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 34047 ||||||||||||| || ||||| || ||||| ||||| | | |||| | | || | Sbjct 36755 CACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATAT 36814 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 || ||| ||||| || || | | ||| | |||||| | |||||||| ||||| Sbjct 36815 TAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCT 36874 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 |||| || |||||||| | ||| || ||| | ||| || || || | ||||| | | Sbjct 36875 CTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGT 36934 Query 34168 TTGGATTTGGTGCAAGGATAGGTTC 34192 | |||||| | ||| | |||||| Sbjct 36935 TCGGATTTTCTCGAAGAAAAGGTTC 36959 >seq271 Length=35139 Score = 228 bits (252), Expect = 1e-54 Identities = 1033/1624 (64%), Gaps = 24/1624 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 || |||| || |||||||| || | || || || || | || | ||| ||||||| Sbjct 29952 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 30011 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 30012 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 30071 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 30072 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 30131 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 30132 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATT--CTTT 30189 Query 62923 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 30190 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 30249 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 30250 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 30309 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 30310 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 30369 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63156 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 30370 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 30427 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| ||||| ||| || || || ||| |||||| | | | Sbjct 30428 T--TTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 30485 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 30486 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 30545 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 30546 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 30605 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || || ||| | | ||||| | ||||| || || | || | Sbjct 30606 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 30665 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 30666 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 30725 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || | | |||||||| ||| || || || | ||||| || ||| ||||| | Sbjct 30726 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 30785 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 30786 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 30845 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||| | |||||| || ||||| || || |||||| |||| | ||||| Sbjct 30846 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 30905 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| || | |||| | |||| ||||||||||| || | || |||| || |||| Sbjct 30906 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 30965 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | |||| || | | | ||||| || | | | | ||| | || | || | Sbjct 30966 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 31025 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA-ACAATTTTGTTGTTT 63815 | || || || || || ||||||| ||| || || || | |||| ||| |||| || Sbjct 31026 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCATTC 31084 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | ||||| || ||||| |||| ||||||||| |||||||||| ||| ||||||| Sbjct 31085 ACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCT 31144 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 | || ||||| | |||||||| || || | | |||| || || ||| Sbjct 31145 CTATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCAC 31203 Query 63936 ATACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 || ||| | |||| |||| | ||| ||| | ||| | || |||| Sbjct 31204 ATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATA 31262 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 | | || |||||| || | ||| ||||| | || |||| ||| || || || | Sbjct 31263 A---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAA 31319 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 ||| || || | ||| |||| ||||||||||| | || ||||| |||| | Sbjct 31320 TTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTG 31379 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 |||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 31380 CTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCT 31439 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATAC 64230 || ||||| | ||||| | | || ||||||||| ||||| | |||| | || | Sbjct 31440 GAGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTC 31499 Query 64231 GAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACA 64290 | | |||||||| || || |||| ||| || ||| | ||||| |||||| ||| Sbjct 31500 GCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACA 31559 Query 64291 TTTT 64294 |||| Sbjct 31560 TTTT 31563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 62136 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62193 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 29399 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 29456 Query 62194 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAG 62253 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 29457 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 29516 Query 62254 TTTTATA 62260 |||| || Sbjct 29517 TTTTGTA 29523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629776535892480