Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 248 8e-61 >seq23 Length=155023 Score = 248 bits (274), Expect = 8e-61 Identities = 402/572 (70%), Gaps = 15/572 (3%) Strand=Plus/Plus Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 |||| | ||| ||||| |||||||||| ||||| || | ||| || || ||||| |||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 36397 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCA 11740 | | ||| ||||||||||||||||| || | ||||||||||| |||| ||||| || Sbjct 36398 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCG 36456 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA-------TAC 11793 || || || ||||| || || || ||||| ||||| ||||||||| || | ||| Sbjct 36457 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 36516 Query 11794 CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 ||| | | | |||||| ||||| | ||||| || | ||||| ||||| Sbjct 36517 TTTG--GATCGCA--CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGT 36572 Query 11854 TTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAA 11913 ||| || ||| | ||||||| |||||| | |||| | | |||||||| || || Sbjct 36573 TTCAATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAA 36632 Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 ||| ||||| ||| || || |||||||| || || ||||||||||| || || ||||| Sbjct 36633 TAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCG 36692 Query 11974 TGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATAC 12032 || || | ||| || || | | |||| | || | ||| ||||| ||||| | Sbjct 36693 AGCTTCGGGGATCTGAACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTC 36751 Query 12033 CATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA 12092 ||||||| | |||||| || || | | ||||| ||||||| | |||| | | | || Sbjct 36752 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATA 36811 Query 12093 ATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTG 12152 ||| ||| |||| | || | ||||| | |||||| |||||||||| |||| Sbjct 36812 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 36871 Query 12153 CCACTGATTGTTTATACATTTTCCAGATATCA 12184 || ||| || |||||||| | ||| || ||| Sbjct 36872 CCTCTGCTTTCTTATACATGTCCCAAATCTCA 36903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468494252183040