Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq23 260 2e-64 seq271 215 7e-51 >seq23 Length=155023 Score = 260 bits (288), Expect = 2e-64 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 36397 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 36398 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 36456 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || || || |||||||| || ||||||||||| | | ||| ||| || | |||| Sbjct 36457 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 36516 Query 36329 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 36517 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 36575 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | | || | ||||||| | |||||| | |||||||||||||| | Sbjct 36576 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 36635 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 ||||| |||||| || || ||||| || || |||||||||||||| || |||| ||| Sbjct 36636 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 36695 Query 36505 CTCGGTAATCTGTACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 |||| ||||| || || | | ||| || | || | ||||||||| || ||||| Sbjct 36696 TTCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCA 36753 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 |||||||||||||| || ||||| || ||||| ||||| | | |||| || | || Sbjct 36754 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA 36813 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 36814 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 36873 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 36874 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 36933 Query 36743 TTTTGATTTTTTGCAAGGATTGGTTC 36768 || |||||| | ||| | ||||| Sbjct 36934 TTCGGATTTTCTCGAAGAAAAGGTTC 36959 >seq271 Length=35139 Score = 215 bits (238), Expect = 7e-51 Identities = 1028/1623 (63%), Gaps = 22/1623 (1%) Strand=Plus/Plus Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 29952 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 30011 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 30012 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 30071 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 30072 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 30131 Query 65656 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 30132 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATTCTT--T 30189 Query 65716 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 65773 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 30190 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 30249 Query 65774 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 65833 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 30250 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 30309 Query 65834 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 65893 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 30310 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 30369 Query 65894 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTT---GTATC 65949 |||| || | ||| || ||| | | | | | |||| | || || | Sbjct 30370 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 30425 Query 65950 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 | |||| ||||| | ||| || || || ||| |||||| | | | Sbjct 30426 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 30485 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 30486 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 30545 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 |||| ||||| || ||||||||||| ||| ||||||| | || ||| || |||| Sbjct 30546 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 30605 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| || || || ||| | | ||||| ||||| || || | || | Sbjct 30606 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 30665 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 30666 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 30725 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | | |||||||| ||| ||||| || | ||||| |||||| ||||| || Sbjct 30726 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 30785 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | |||||||| ||| | || || || || ||| || || || | | Sbjct 30786 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 30845 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 30846 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 30905 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 30906 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 30965 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | |||| || | | | ||||| || | | | | ||| | || | || | Sbjct 30966 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 31025 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | || || || || || ||||||| ||| || || || | |||| | || || | Sbjct 31026 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 31085 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 31086 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 31145 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 66729 || ||||| | || ||||| || || | | |||| | || ||| | Sbjct 31146 TATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACA 31204 Query 66730 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTGAATAA 66784 | ||| | |||| |||| | ||| ||| | || | || ||||| Sbjct 31205 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 31263 Query 66785 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 66844 | || |||||| || | ||| ||||| | ||| |||| ||| || | || || Sbjct 31264 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 31320 Query 66845 TCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 66904 || ||| || | ||| |||| ||||||||||| | || ||||| |||| || Sbjct 31321 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 31380 Query 66905 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 31381 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 31440 Query 66965 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 67024 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 31441 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 31500 Query 67025 AGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 67084 | |||||||| || || |||| ||| || ||| | ||||| |||||| |||| Sbjct 31501 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 31560 Query 67085 TTT 67087 ||| Sbjct 31561 TTT 31563 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 64929 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 64986 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 29399 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 29456 Query 64987 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 65046 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 29457 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 29516 Query 65047 TTTTATA 65053 |||| || Sbjct 29517 TTTTGTA 29523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658129887133440