Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq271 297 3e-75 seq23 268 1e-66 >seq271 Length=35139 Score = 297 bits (328), Expect = 3e-75 Identities = 1430/2248 (64%), Gaps = 52/2248 (2%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 || || |||||||||||||| || || ||||| ||||| ||||||||||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 78808 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 78865 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 29399 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 29456 Query 78866 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 78925 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 29457 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 29516 Query 78926 TTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCAT 78982 |||| || | || | || |||| | | |||| || | ||| || | || Sbjct 29517 TTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGAT 29576 Query 78983 CTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTA- 79041 | | || |||| | ||| |||| || || |||| | || |||| Sbjct 29577 CGCGAAGGATTTGATTCCGAACGTCTGATGTCCACAAATTCATCTCAAT--AAGCTCTTC 29634 Query 79042 -AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATT 79100 | ||||| || || | | ||||||||||| | || | ||| || | || || Sbjct 29635 CATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGTT 29694 Query 79101 ACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGG 79160 || | || || | || || ||| || | ||||||||| ||||| || ||||| Sbjct 29695 GGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTGG 29754 Query 79161 CATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-ATCTGATTTTATCTTTTAGAG 79219 ||| || || | || ||| |||| | |||| | | || | || ||||| | Sbjct 29755 CATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCT-ACTTGCTCTTTCAACT 29813 Query 79220 ATTCCCAATCCCAAAGATCAGA--CGGGACA-ACATTCCAAAGATCATATTGTAGAATAC 79276 | ||||||||| || | || ||||| || | ||| | |||| |||| | |||| Sbjct 29814 GCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATAC 29873 Query 79277 CGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATT 79333 | |||| | |||||| | || | || || ||||| |||| | || |||| Sbjct 29874 CTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGAGTTCCCGT---GCCAATT 29930 Query 79334 CACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 79393 | || || | || || |||| || ||||| ||||| | || ||||| || Sbjct 29931 CCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGC 29990 Query 79394 GTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 79453 | || || ||| ||||||||| | | | || | ||||| || || | ||||||| Sbjct 29991 GAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAA 30050 Query 79454 CACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 79513 | || || || || |||| ||||| || ||| | || ||||| ||||| ||||||| Sbjct 30051 CGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAAT 30110 Query 79514 AATTAATATCTATAATTTTATTGAGATT---CCTGACTATTACTTTGACCACATCCTTTA 79570 |||| | ||| || ||||| |||||||| | | || ||| | ||| || | || Sbjct 30111 AATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATT---TCGTATA 30167 Query 79571 GTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGTT--CAACGCGACAGATGCCAG 79628 ||| ||| | |||| || ||| |||| | || || ||| |||| || |||| Sbjct 30168 ATTTTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAA 30225 Query 79629 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACT 79688 ||| || || || || || || | || | || | || |||||| |||||| || || Sbjct 30226 ATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCT 30285 Query 79689 ACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 79748 | ||||||||| | ||| || ||||| || ||||| || || || ||||| Sbjct 30286 TGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAG 30345 Query 79749 AATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT-CGAG 79807 || |||| || || || ||||||||| || | ||| || ||| | | | | | Sbjct 30346 CATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACA--ATTGCTGG 30403 Query 79808 CCTTTATTATAGACTT---GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGA 79864 |||| | || ||| | | |||| ||||| | | |||||| || | Sbjct 30404 GCTTTG--ACAGTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCAA 30461 Query 79865 ACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACT 79924 | ||| |||||| || | | || ||| |||| ||||| | || ||| | Sbjct 30462 ATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATT 30521 Query 79925 CTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 79984 || | || | || ||||||||||| ||||| || ||||||||||| ||| | || Sbjct 30522 CTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAAT 30581 Query 79985 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 80044 ||| | || ||| || ||||| |||||| || || || ||| | | |||| Sbjct 30582 CTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATAT 30641 Query 80045 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC-GTTTGTTTCCTCCCTGA 80103 | | ||||| || || | || || || | || ||| || | || || || ||| Sbjct 30642 CCGCGTGCCAGGGCTCTAGATAAATTGCAA-AAGACCCTTTCCGCTTCCCACCGCCTTGA 30700 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | ||||| ||| |||| ||| | || | | |||||||| ||| ||||| || | Sbjct 30701 TCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTT 30760 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 80223 ||||| |||||| ||||| || ||| |||||||| ||| | || || Sbjct 30761 CCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATA 30820 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || || ||| || || || | || ||| |||| | ||| || || ||||| || || Sbjct 30821 CCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATA 30880 Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||| |||| | ||||||||| || | |||| | ||| ||||||||| Sbjct 30881 GAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCA 30940 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || | || |||| || |||||||| | |||| |||| | | ||||| || Sbjct 30941 TTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 31000 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 | | | | || | || | || || || || || || || ||||||| ||| || || Sbjct 31001 AAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTTGT 31060 Query 80464 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAA 80523 || | |||| | || ||| | ||||| || ||||| |||| ||||||||| Sbjct 31061 GGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAG 31120 Query 80524 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTA 80583 |||||||||| ||| |||||||| || ||||| | || ||||| || || Sbjct 31121 CCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAGAGCTTCTTTG 31180 Query 80584 TATTTGTTAACTACATCCATGGTGATACTTG--AAATAATCGGAGAATG---TTTCCCAT 80638 | | |||| | || ||| || ||| | |||| |||| | ||| Sbjct 31181 TTCTCCATAAC-AATTCGATGCACATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGG 31238 Query 80639 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 80698 ||| | ||| | || ||||| | || |||||| || | ||| ||||| | Sbjct 31239 TTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGTAT 31295 Query 80699 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTG 80758 || |||| ||| || | || |||| || || || ||| |||| |||||||||| Sbjct 31296 TTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTG 31355 Query 80759 TAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCAT 80818 | | || ||||| |||| ||||||| ||||||||| || || || || Sbjct 31356 TGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCG 31415 Query 80819 TATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTA 80878 ||| | || || || ||| || ||||| | ||||| | | || ||||||| Sbjct 31416 GATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGTTTA 31475 Query 80879 AGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGT 80938 || || || | |||| | || || | |||||||| || || |||| ||| || Sbjct 31476 AGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTC 31535 Query 80939 ATCCATTTCGTTTAATGACAAACATTTT 80966 ||| | ||||| |||||| ||||||| Sbjct 31536 GTCCGTCACGTTTGATGACATACATTTT 31563 >seq23 Length=155023 Score = 268 bits (296), Expect = 1e-66 Identities = 601/892 (67%), Gaps = 23/892 (3%) Strand=Plus/Plus Query 49675 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 49734 ||||| || || ||||| || ||||| || |||||||||| || || || | ||||| Sbjct 36061 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 36120 Query 49735 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 49794 | ||||| ||||| | | | | ||| | || | | || | | || | ||||| | Sbjct 36121 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATCGA 36180 Query 49795 TCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 49854 ||||| ||||| || || ||| ||||| |||||||||| || || | ||| Sbjct 36181 TCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGACT 36240 Query 49855 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 49914 ||||| | | | |||||||||||| ||| || || || | || || | | Sbjct 36241 GGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATGA 36300 Query 49915 ACGGTTTCTTCACTCGGTGGATGCAA---TAAATGTTTAAA---CATCAAACATGCGAAA 49968 | | |||| |||| || || |||| | ||||| |||||| || Sbjct 36301 ATAGAGCCTTC------TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 36354 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || || || || || || || | ||| || || || || ||||| ||||| ||||| Sbjct 36355 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 36414 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTC 50087 | || || || || ||||||||||| || ||| ||||| || || || ||||||||||| Sbjct 36415 AATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTC 36473 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC-CACT-TT 50145 || || |||||||| || | ||| ||| || | ||| | || ||| ||| || Sbjct 36474 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATT 36532 Query 50146 TGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | | ||||| | || || || | || || || || ||||| || || | | || Sbjct 36533 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAAT 36592 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | ||||||| | |||||| | || ||||| ||||| | ||||| |||||| | Sbjct 36593 GCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 36652 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || ||||| || || || ||||||||||| || |||| ||| |||| ||||| || | Sbjct 36653 GTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCT 36712 Query 50324 CTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 | | | || |||| || | ||||||||| || ||||| |||||||||||||| || Sbjct 36713 CACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAA 36770 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGAT 50441 ||||| || ||||| ||||| ||| |||| ||| | || ||| ||| ||||| || Sbjct 36771 GGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCAT 36830 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 || | | ||| | |||||| | |||||||| ||||||||| || |||||||| Sbjct 36831 GTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACAT 36890 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | ||| || ||| | ||| || || || | ||||| | || |||||| Sbjct 36891 GTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTT 36942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718221968874240