Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 244 1e-59 >seq23 Length=155023 Score = 244 bits (270), Expect = 1e-59 Identities = 520/760 (68%), Gaps = 25/760 (3%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| || || | ||||| Sbjct 36060 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 36119 Query 13646 AAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 | ||||| ||||| | | ||| | |||| | || || ||| | || ||| Sbjct 36120 CCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACG-CCAAGTGCATGTAACAAT 36177 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 36178 CGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG 36237 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || |||| | || || |||||||| ||| || || || || ||| ||| Sbjct 36238 ACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGATT 36294 Query 13824 GTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGCAA 13878 | | ||| | || ||| | | |||| |||| | || | ||| |||| Sbjct 36295 GCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 36352 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| || || ||||| | ||| || || || |||||||| | ||| |||| Sbjct 36353 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 36412 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCC 13997 ||||||||||||| || | ||||||||| | |||| ||||| ||||| || || ||||| Sbjct 36413 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 36471 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCC 14055 || || || ||||| |||| | || |||| ||||||| || | ||| | ||| || Sbjct 36472 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CACC 36529 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| || ||| | ||||||||||| || | || Sbjct 36530 ATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTA 36589 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||| | || || | | | | |||||||||||||| | ||| ||||| ||| | Sbjct 36590 AATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCG 36649 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 ||||||| ||||| || || || ||||| || |||||||||| |||||| | || | Sbjct 36650 AGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAA 36709 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 | || | | |||| | ||| | ||||||||| || || |||||||| |||||||| Sbjct 36710 CCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAG 36768 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 || ||||| | || ||| ||||||| | || |||||||| Sbjct 36769 AAGGCCAACACGTGTTTGATAAAGTGT--CT-TTCATTGT 36805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479696721734400