Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 262 4e-65 >seq23 Length=155023 Score = 262 bits (290), Expect = 4e-65 Identities = 523/759 (69%), Gaps = 23/759 (3%) Strand=Plus/Plus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||| | ||| | ||| ||||||||||| ||||| |||| ||| || || | ||||| Sbjct 36060 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 36119 Query 13434 AAAATCGAATGGATTTGT----TGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 | || || ||||| | ||| |||| ||| | || || ||| | ||| | Sbjct 36120 CCAGTCAAAGGGATTAGAAGCGTGATATAA---CTTGCTGACG-CCAAGTGCATGTAACA 36175 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||| ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 36176 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 36235 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || |||| | || || |||||||| ||| || || || ||| || || Sbjct 36236 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTG 36295 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA--AAATTAAACACGCAAA 13667 | |||| | | | | | || ||||| | || | | || | ||| ||||| Sbjct 36296 CATGAATAGAGCCTTCTGGA--AGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 36353 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||||||| || || ||||| | ||| || || || |||||||| | ||| ||||| Sbjct 36354 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 36413 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCT 13786 |||||||||||| || | ||||||||| | ||| |||||||||||| || || ||||| | Sbjct 36414 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 36472 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC-TTTTTTGTTTGATATCCAT 13845 | || || ||||| |||| | || |||| ||||||| || | |||| | | |||| Sbjct 36473 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCAT 36531 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||||| | ||| || ||| | |||||||| || || | |||| Sbjct 36532 TTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAA 36591 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || | | | | |||||||||||||| | ||| ||||| ||| ||| Sbjct 36592 TGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 36651 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| |||||||| || || ||||| || ||||| |||| |||||| | || ||| Sbjct 36652 TGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACC 36711 Query 14026 TC-CGAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 || | | ||| || || | || |||||||| ||||| |||||||| |||||||| | Sbjct 36712 TCACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGA 36769 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 | ||||| | || ||| ||||||| | || |||||||| Sbjct 36770 AGGCCAACACGTGTTTGATAAAGTGT--CT-TTCATTGT 36805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478557596010240