Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq271 257 2e-63 seq23 235 7e-57 >seq271 Length=35139 Score = 257 bits (284), Expect = 2e-63 Identities = 1038/1623 (64%), Gaps = 28/1623 (2%) Strand=Plus/Plus Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||| || ||||| ||||| | || ||||| || | || | ||| ||||||||| Sbjct 29955 AATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAA 30014 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || | ||||| || || | ||||||||||| || || || |||| |||| Sbjct 30015 GACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTC 30074 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| |||| Sbjct 30075 GCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 30134 Query 71621 GATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 ||||| | || ||| | ||| || | || ||| ||| | |||| | | Sbjct 30135 GATTTTTCGTAACGATTTTTGTGATT---TCGTATAATTTTGCAAATTGAAATT--CTTT 30189 Query 71678 CTATTACAAACACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || |||| | | || ||| || | || |||| ||| || || || || || || | Sbjct 30190 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 30249 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 || | || | || |||||| ||| ||||| || | |||||||| | ||| || Sbjct 30250 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 30309 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 ||||| || ||||| || || || ||||| ||| |||| || || || ||||| Sbjct 30310 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 30369 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATATTCTT---GTATC 71911 |||| || | ||| || ||| | | | | | |||| | | |||| | Sbjct 30370 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 30425 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 | |||| ||||| | | |||||| || || ||| |||||| | | | | Sbjct 30426 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 30485 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 || ||| || |||||||| | || ||| ||| | || | || ||||||| Sbjct 30486 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 30545 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 30546 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 30605 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | |||||| || || || ||| | | ||||| | ||||| || || | || | Sbjct 30606 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 30665 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 30666 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 30725 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | | |||||||| ||| ||||| || ||||| |||||| ||||| || Sbjct 30726 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 30785 Query 72272 CACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||| ||||||||| ||| | || || || || ||| || || || | | Sbjct 30786 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 30845 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 30846 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 30905 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 30906 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 30965 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | |||| |||| | | ||||| || | | | | || | || | || | Sbjct 30966 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 31025 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 |||| || || || || ||||||| |||||| || || | |||| | || ||| | Sbjct 31026 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 31085 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 31086 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 31145 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 72691 || ||||| | |||||||| || || | | |||| || || ||| | Sbjct 31146 TATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCACA 31204 Query 72692 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 | ||| | |||| |||| | ||| ||| | ||| | || ||||| Sbjct 31205 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 31263 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 | || |||||| || | ||| ||||| | || |||| ||| || | || || Sbjct 31264 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 31320 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 72866 || || || | ||| |||| ||||||||||| | || ||||| ||||||| Sbjct 31321 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 31380 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 31381 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 31440 Query 72927 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 72986 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 31441 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 31500 Query 72987 AGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 | |||||||| || || | || ||| | ||| | ||||| | |||| |||| Sbjct 31501 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 31560 Query 73047 TTT 73049 ||| Sbjct 31561 TTT 31563 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 || || ||||||||||| ||||| || ||||| ||||| |||| |||||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 70891 GTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || ||||| | || | || ||||| ||||||||||| | || ||||| ||| || Sbjct 29399 GTGAGTTTACTGACAG-TCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 29457 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 | | ||||| | || |||||||| | | |||| |||||| |||||||||| || Sbjct 29458 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 29517 Query 71010 TTTATA 71015 ||| || Sbjct 29518 TTTGTA 29523 >seq23 Length=155023 Score = 235 bits (260), Expect = 7e-57 Identities = 426/612 (70%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| |||||| || || || || || || ||||| | ||| || | || || |||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 36397 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | ||||| ||||| | || || || || |||||||||||||| ||| |||||||| Sbjct 36398 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 36456 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||||||||| || ||||||||||| | | ||| ||| || | |||| | Sbjct 36457 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCA-TA 36515 Query 42236 TCATGTATC-CA-CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| || | ||| | ||||| | || || || | || || || || ||||| Sbjct 36516 CTTTGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 36575 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | | || | ||||||| | |||||| | |||||||| ||||| | Sbjct 36576 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 36635 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||||| ||| || || || ||||| || || || ||||||||||| || |||| || Sbjct 36636 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 36695 Query 42412 CTCGGTAACCTGTACTT--CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 |||| | ||| || | ||| ||| || | || | |||||| || || ||||| Sbjct 36696 TTCGGGGATCTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCA 36753 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCCGGTGTT 42526 |||||||||||||| || ||||| || ||||| ||||| | | |||| |||| | | Sbjct 36754 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCC---GAT 36810 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | ||| ||| ||||| || || | | ||| | ||||||| | |||||||| | Sbjct 36811 ATATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 36870 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 || ||||| || |||||||| | ||| || ||| | ||| || || || | ||||| Sbjct 36871 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 36930 Query 42647 CTATTTGGATTT 42658 | || |||||| Sbjct 36931 CGGTTCGGATTT 36942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671095441724160