Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq23 208 7e-49 >seq23 Length=155023 Score = 208 bits (230), Expect = 7e-49 Identities = 562/843 (67%), Gaps = 24/843 (3%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | ||| | ||| |||||||||||||||||||||| | ||||| | ||||| Sbjct 36060 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 36119 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTA-GTAACAA 12981 | || || ||||| ||| | ||| || | || | || | | ||||||| Sbjct 36120 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 36176 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 || || || |||||||| ||||| || ||| ||| | |||||||| |||| | Sbjct 36177 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 36236 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | | ||| || ||| | || ||| || ||| || ||| || || | Sbjct 36237 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 36296 Query 13102 TCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | || | | || |||| | |||| || | | |||||| ||||||||| Sbjct 36297 A-TGAATA-GAGC-CTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 36353 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| || | ||||||||| | ||| || ||||| |||||||| || || ||||| Sbjct 36354 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 36413 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTCCTT 13277 | |||||||| || | ||||||||||| |||| || || || || ||||| ||||||| Sbjct 36414 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 36472 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC-CAC 13336 | || || ||||| |||| || ||||| || ||| | |||| | ||| ||| Sbjct 36473 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACG----AGGCATACTTTGGATCGCAC 36528 Query 13337 --TTTC-TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 |||| ||||| | |||||| | ||||||| || |||| || ||| | | Sbjct 36529 CATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGT 36588 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| | |||||| | ||| || || ||||| |||||||| ||||| ||| Sbjct 36589 AAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCC 36648 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || |||||||| || || ||||| || || ||||| |||| ||| || | | |||| Sbjct 36649 GAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGA 36708 Query 13514 ACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | | |||| | || | ||||| || || || || ||||| || ||||| Sbjct 36709 ACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAA 36767 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 || || | | ||| || ||||| | | |||| || || || | || | ||| || Sbjct 36768 GAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATT 36827 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || | ||||| | || || |||||||||| || | || |||||||| Sbjct 36828 CATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATA 36887 Query 13693 CAT 13695 ||| Sbjct 36888 CAT 36890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430955002448832