Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23 125 2e-23 seq1 118 2e-21 >seq23 Length=155023 Score = 125 bits (138), Expect = 2e-23 Identities = 386/590 (65%), Gaps = 13/590 (2%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| ||||| || ||| || ||| ||||| || | || | || Sbjct 36929 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 36870 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 |||||||| | ||||||| | ||| || ||||| | | || ||| ||| || Sbjct 36869 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 36810 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | |||||| ||||| | | | || || ||||||| |||||||| Sbjct 36809 TCGGACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGA 36750 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || || |||||||| | ||| ||| | ||||| ||||| || ||||| || Sbjct 36749 ATTGTCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGA 36690 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || ||||||||||| || || || ||||||||||| || || || |||| |||| Sbjct 36689 TGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTG 36630 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT----TCTATGAG 269058 || ||||| || || | ||| |||| | |||| | |||| || | || Sbjct 36629 ATTGATACATACATCAAAGAT-CCAACTGA---AAAACAGCATTTACTGTGCGCGATTGA 36574 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG-ATAAACGATAGCG 269117 ||| || || || | || ||| | ||||||| |||||||| | | | || Sbjct 36573 AACAATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTA 36514 Query 269118 CGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 |||| | | |||||| | || || ||||| || || ||||| || || || || || Sbjct 36513 TGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGG 36454 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA-TTAACTTTCT 269234 || || | |||| |||||| |||||||| |||| | ||||| ||| || |||| | Sbjct 36453 ATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTT-T 36395 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | || || | || || | || ||||| |||| || ||||| || ||| Sbjct 36394 CAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGT 36345 >seq1 Length=398508 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 11235 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 11294 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 11295 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 11352 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 11353 ACTTCGAGTGTAATTGTTTTTCC 11375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151321452044928