Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq226 118 9e-22 seq271 96.9 3e-15 >seq226 Length=41712 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 24304 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 24245 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 24244 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 24185 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 24184 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 24125 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 24124 ATCCAAAAAG 24115 >seq271 Length=35139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 1101/1762 (62%), Gaps = 98/1762 (6%) Strand=Plus/Plus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 29431 AATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 29490 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 29491 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGGCGGAAT 29547 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 29548 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 29605 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 29606 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 29665 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 29666 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 29725 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 29726 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 29783 Query 129263 AACCGTG-CTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA-CATC--GATGTGGGT 129318 ||||| | || | | | ||| || || |||| ||||| | | || ||| Sbjct 29784 TTCCGTGAGTAGCTACT-TGCTCTTTCAACTGCTTCCAATCCCATCGACCGGAATCGGGA 29842 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAAGTA 129374 || | ||||| || |||| || ||||| | |||||| | | | | || Sbjct 29843 ATGACCTGCCACATATCAAATTGAAAGATACCTCGACTAACTGGTGATCCAGCA----TA 29898 Query 129375 GGAATCGTGCACGCCGTAAGCTTTTGCCAATTC---GCAACTCGCTTCCAATGCGCCAAA 129431 | |||| | ||| | ||||||||| | || ||||||| || | || Sbjct 29899 GCTCTCGTACGGTCCGAGTTCCCGTGCCAATTCCATGGAA---GCTTCCATCGCCGCGAA 29955 Query 129432 ATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 ||| || ||||| ||||| |||| | | | || | |||||| | || | Sbjct 29956 ATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAAG 30015 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 || || || ||| || ||||| | |||||||| || | || || ||||||||| Sbjct 30016 ACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCG 30075 Query 129552 TCTATTGGATTTTTGTGCCGACAACAA-GGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 |||| ||||| | || || ||||| || |||| || || |||||||| | Sbjct 30076 CTGATTGCTCACTTGTG-CTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 30134 Query 129611 AATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670 ||| || || ||||| || | | | ||| ||| |||||| | | | | | Sbjct 30135 GATTTTTCGTAACGATTTTTGTGATTTCGTATAA-TTTTGCAAATTGAAAT-TCTTTC-- 30190 Query 129671 CGATGTCGACAAATTGATTGACA--CAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 || | ||||||| |||||| || || ||||||||||| || || ||| || Sbjct 30191 TGA--TACACAAATT--TTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTT 30246 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 ||| |||||||| ||||| ||| | ||| || | |||||| || | || Sbjct 30247 GGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATT 30306 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||||| ||| || ||||| |||||||| | ||| |||||||| || || || Sbjct 30307 CTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTC 30366 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGA---TCTGTCTTACAAA 129905 | || | || | ||||| |||| | | || |||| ||| || ||| Sbjct 30367 AATCTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAAT 30426 Query 129906 TTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATT--CTGAGCCGTGT---ACG 129960 || | | |||||| |||| | ||||||| || || ||| | Sbjct 30427 GTTTTGAGA---CTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATA 30483 Query 129961 GTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 |||| | | | || | |||||| | |||||||| | | |||| || Sbjct 30484 AAGTCGTGGAGCCTCGTT-----CGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACA 30538 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 ||||||||||||| |||||| | ||| || || || ||||||||||| || || || Sbjct 30539 CGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGC---TCGATGG 30595 Query 130081 TCGGCA--CCCATG----TTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 || ||||| |||||| ||||| || || || | || || |||||||| Sbjct 30596 AGTTCATTTCCATGATTCTTACGT---AGTTCCAGAAACTCAAAGATATCCGCGTGCCAG 30652 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGC 130191 || || | ||||||||| | | || ||||| || || ||||| ||||||| || Sbjct 30653 GGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGA 30712 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | | ||| | || || | ||||| | | ||| || | | || || || | Sbjct 30713 GCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCG 30772 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 ||| ||||| | |||| || || || | || || ||||| | | Sbjct 30773 CGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCAC 30832 Query 130312 TTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTA 130371 ||||| || |||| || | ||||| || |||||||| ||||| || |||| Sbjct 30833 TTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGC 30892 Query 130372 ATGTTTAGGAGGAAACACGAGGCCAATTGGGCGTAACATGAT-CCGCTGGCAAACAAAGT 130430 ||| || || |||||||| | ||||||| | | | |||| ||| | || Sbjct 30893 ATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAA-AGCGT 30951 Query 130431 TGGACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGTTTCAAAAACGTTTTC 130490 ||| ||||||| ||| | | || |||| ||| | |||||||| |||||| || Sbjct 30952 CGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTC 31011 Query 130491 AATGCAATCGTCGGTGTCGTTGCCGTGTATGGTTAGAGCCACACGCATGTACATATGTTG 130550 | ||| | || || ||||||| | |||||| ||||| ||||||||| Sbjct 31012 CA---AAT------TCTCTTT---GTGTATGCCGACAGCCACTCGCATTATCATATGTTG 31059 Query 130551 AATGCGCTCCGCCAC-TTTCCCCTCAATCGTTTTCA--AGTAACCATTT-TCGAGAGTTT 130606 ||| || ||| ||||| ||| || || || || |||| || ||||||| Sbjct 31060 TGGGCGTTCACACACTTTTCCATTCACACG----CAACAGATACGATTTCTCCAGAGTTT 31115 Query 130607 TAAATCCAAAATATTTGTAATC 130628 |||| |||||||| | |||||| Sbjct 31116 TAAAGCCAAAATAGTCGTAATC 31137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701317891040