Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq226 159 6e-34 seq145 136 7e-27 seq1 105 1e-17 seq85 91.5 3e-13 seq4962 86.0 1e-11 seq3375 84.2 4e-11 >seq226 Length=41712 Score = 159 bits (176), Expect = 6e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| ||||| | ||| || | || || || || || || || ||||| | Sbjct 24115 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 24174 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||||||||| ||||| |||||||||||||||||||| ||||| || | Sbjct 24175 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 24234 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| ||||| | |||||| || || | ||||| ||||| || ||||| |||||||||| Sbjct 24235 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 24294 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 24295 AAATCTGCATT 24305 >seq145 Length=57194 Score = 136 bits (150), Expect = 7e-27 Identities = 256/371 (69%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||||| || | || ||| | ||| | |||| ||||||| |||||||||||| | Sbjct 51506 ACAAAATCTTGAGGATCATTATGCTGCATCATTCTCCACATACATTCGACATAGTCTCTT 51447 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 ||||| ||||| || || || || |||| || || || | ||||| | || | || Sbjct 51446 GCATGACCCCAGTCTCGTTTAGCATCCAAATTTCCAAGATAGAGGCAATCTTGATACCCT 51387 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | |||| ||| |||| || || || || ||||||||||| || || | Sbjct 51386 TCATTGATGCGTACAACCGCGCGGGTAATCTTGCGAGTCACGAACGTTAGCCCCCGGCGT 51327 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 || |||||||| || || | ||| || || ||| || || || |||||| || | ||| Sbjct 51326 GGACTCTCGTGATTAAATAAGATTCCATT-CACTGCAAATATTTTATATGCTTCTCTGTA 51268 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 || ||||||| ||| |||||||| ||||||||| |||||||||| || || | || Sbjct 51267 ATTAACGACCGACCAATATGCAAATTGCTTTGCAACACCGTACGGAGATCGCGGGTAAAA 51208 Query 268522 GGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATG 268580 |||| || || || || || ||||||| | || || ||||||| || || | Sbjct 51207 AACCGTC-TGTTCATTCTGTGGCGTTTCTCGAGCGTTCCCGTAGAGCTCACTCGTGGAAG 51149 Query 268581 CTTGGTAGAAC 268591 |||| || ||| Sbjct 51148 CTTGATAAAAC 51138 >seq1 Length=398508 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | || || ||||| || || || | ||||||||| || ||||| |||||| Sbjct 11245 CCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCC 11304 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||| |||||||||||||| | || Sbjct 11305 TTGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTA 11364 Query 68424 ATGGTTTTTCC 68434 || |||||||| Sbjct 11365 ATTGTTTTTCC 11375 >seq85 Length=81680 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 176268 TCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTA 176327 || || || || |||||||||| |||||||| || |||| |||| |||||||||| Sbjct 72626 TCTTTTCCACCTTGAAGGCGGGTTCCGAATTGACCTGAAGGATACAGCATATTGATGTTA 72685 Query 176328 TTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCG 176387 || ||||| || ||||| || ||||| || || | || || || ||||| || Sbjct 72686 TTGGAACCAACATAGTCCTGCGCCATGTTAACAATAGTAGAGTGCAGCGATGCCTCACCA 72745 Query 176388 TGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGT 176447 || ||||| | | | |||||| |||||||| | ||| || ||||| ||||| ||| Sbjct 72746 TGATGATACGCTGTATGCTCACTACAATATCCGGCCAGCTGTGCTACTTTCATTTCCTGT 72805 >seq4962 Length=163 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 84519 ||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 57 TAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCA 1 >seq3375 Length=231 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACAT 84522 ||||||||| || |||||||||| ||||||| ||||||||||||||||||| |||||| Sbjct 163 TAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGATCCCCACGG 104 Query 84523 CGGGCA 84528 ||||| Sbjct 103 TGGGCA 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921562310219520