Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq271 125 6e-24 seq226 105 6e-18 >seq271 Length=35139 Score = 125 bits (138), Expect = 6e-24 Identities = 605/938 (64%), Gaps = 27/938 (3%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG-AG 123664 || |||||||||||||| ||||| ||||||||||| || || | ||| |||||||| || Sbjct 30366 GAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAG 30307 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 | ||||| ||| || || || ||||| |||| ||||| ||||| ||| || | Sbjct 30306 AATCTTGG-AACCATTCGATCAAGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTC 30248 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC---GTGAATCGTTGCGTCGAAAA 123781 | | ||||||| || || ||||||||||| | | || || || ||| || | | Sbjct 30247 CAAAGAAGTGGCAGTATGCAATTTGGCTTCCA-TCGCATTGTCAAAATTTGTGTATCAGA 30189 Query 123782 CGGCGCTTTTAATTTCCAAACGCTCAAACG-CATAACAAAAACTGTAGTAAAGAATTTGA 123840 | ||| ||||| |||| | | ||| || ||||||| || || ||| | | Sbjct 30188 AAG-AATTTCAATTTGCAAA--ATTATACGAAATCACAAAAATCGTTACGAAAAATCTCA 30132 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 ||||||| || ||| | |||| |||||| | ||||| | || ||| | || Sbjct 30131 ACAAAATCATTGATCTCAATTATTATCCGATTCCTGAAGCACAAGTGAGCAATCAGCGAC 30072 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | ||||| | ||| | ||| ||||||| | ||||| ||||| || || || | | | Sbjct 30071 ATCGACCGATTGGAATCGGCGTTCAAGGTCTTGCCGATACGTTTTTACTGATGAGTCTTC 30012 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | | |||||| | | || ||| || | |||| ||||| || |||| || Sbjct 30011 CATTTGAAAGCAAAGCTGCTCGCGAGCTCAACAAAGAAATTTTTGAAACGATGTATTTCG 29952 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTG--CGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 || |||| || | ||| | | || || | ||| ||||||| || || || Sbjct 29951 CGGCGATGGAAGCTTCCATGGAATTGGCACGGGAA--CTCGGACCGTACGAGAGCTATGC 29894 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATG-CTACACCGA--C 124135 || || | || |||||||| || || | || |||||| | | | |||| | Sbjct 29893 TGGATCACCAGTTAGTCGAGGTATCTTTCAATTTGATATGTGGCAGGTCATTCCCGATTC 29834 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195 | ||||| |||| || ||| | | || | || ||||| | || ||||| Sbjct 29833 CGGTCGATGGGATTGGAAGCAGTTGAAAGAGCAAGTAGCTACTCACGGAATCCGAAACTC 29774 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 || || | || ||||| || || | || ||||||||| | || || ||| || Sbjct 29773 TTTGCTGCTCGCTCCGATGCCAACCGCCTCAACGGCTCAAATTCTCGGCAATTGCGAGTC 29714 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG-ATTTTCAAG 124314 |||||||||||||| ||| ||| | ||||| || | || || | |||| ||| Sbjct 29713 TATCGAGCCGTTCACTTCCAACATGTTCAATCGACGCGTCCTCGCTGGAGAATTTACAAT 29654 Query 124315 TGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGT--ACGATGAAAACAT 124372 || | || | || | |||| || | | | | | ||||||| || || | || | Sbjct 29653 TG-TCAACAAATATCTCATGGAAGAGCTTATTGAGATGAATTTGTGGAC-AT-CAGACGT 29597 Query 124373 GCGCAACGAAATTATT-GCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAAC 124431 || || |||| || ||| | | || ||| || |||||| |||||| | Sbjct 29596 TCGGAATCAAATCCTTCGCGATC-GCGGTTCCGTACAAAATATCGCTGAAATTCCGCCTC 29538 Query 124432 ACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAA-AAATAAACGATTAATTGAAATG 124490 | || || || ||||||||| || |||||||| || || | ||||| | || ||| Sbjct 29537 ATGTGAAAGAAAAGTACAAAACAGTTTGGGAAATCAAGCAAAAGGCGATT-TTGGACATG 29479 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 || | ||| ||||| ||||||| ||| |||||||| Sbjct 29478 GCTGCCGATCGAGGAGCGTACATTTGTCAGAGTCAATC 29441 >seq226 Length=41712 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 |||||||| || ||||| || ||| || |||||||||||||||||| | ||| Sbjct 24117 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 24176 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || || || ||||| || ||||| ||||| || |||||||| || || | || Sbjct 24177 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 24236 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | |||||||| || ||||| || ||||| | ||||| ||||| || || || || ||| Sbjct 24237 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 24296 Query 45333 ATTTGCAT 45340 || ||||| Sbjct 24297 ATCTGCAT 24304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973729391360