Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 114 2e-20 seq271 89.7 6e-13 >seq23 Length=155023 Score = 114 bits (126), Expect = 2e-20 Identities = 267/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 36361 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 36420 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 36421 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 36480 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 36481 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 36540 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 127770 || ||||| || || | || |||| || | ||||| || || | | || || Sbjct 36541 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 36599 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT 127830 ||| | ||||||||||||||| |||| || | | ||||| ||| ||| | | Sbjct 36600 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 36659 Query 127831 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| | Sbjct 36660 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCACTG 36717 Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 127926 ||||| | || ||| ||| ||||||||||| Sbjct 36718 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 36755 >seq271 Length=35139 Score = 89.7 bits (98), Expect = 6e-13 Identities = 369/574 (64%), Gaps = 11/574 (2%) Strand=Plus/Plus Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTC--TTCACCCACAGCCTCTGAGAGCCCTGGT 116712 |||||||||| || | || ||||| || ||| |||| | ||| | || | ||| Sbjct 30436 CTCGTACTTTTCATATAACGCATCAAATTCGCTTC-CCCAT-GTCTCATAAAGTCGTGGA 30493 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| | |||||||| | | ||||| || || || || ||||| || || Sbjct 30494 GCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGA 30553 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| || || | || | ||| ||| ||| ||||| || ||||| Sbjct 30554 TCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTC 30613 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 ||| | |||| ||| || | ||||||||||||||| || || || || | || | Sbjct 30614 TTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAA 30673 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 ||||| || || | ||| | || | || || | || || | || || || ||| Sbjct 30674 GACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGA 30733 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 |||||||||| || |||| || ||||| ||||| |||||| | ||| ||| Sbjct 30734 AGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAG 30793 Query 117010 CTGACATCGTGGATGTGC--ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | || || |||| | | | |||||||| || ||||||||||| || || || | Sbjct 30794 C-GA-ATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATT 30851 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | || || |||| || || ||||| || ||| | | | | | || || || Sbjct 30852 GTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACG 30911 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||| | ||| || | || || || || ||||| || || || || || || | || | Sbjct 30912 ACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGA 30971 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC 117221 ||| ||||| | || || || ||||| || Sbjct 30972 ACTTTTGTGACATGTGTTCATACGTTTCCAAAAC 31005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613467199330560