Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 167 2e-36 seq226 98.7 1e-15 >seq23 Length=155023 Score = 167 bits (184), Expect = 2e-36 Identities = 411/616 (67%), Gaps = 12/616 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| || |||||||| ||||| | || || || | ||||| || || ||| Sbjct 36338 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGA 36395 Query 132947 AAGTCAAG--CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 || ||| || ||||| | || ||||| || ||||||||||| | | ||| || Sbjct 36396 AAAGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCC 36455 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 || || |||| || ||||||||||| || || |||| | || | |||| ||| | Sbjct 36456 GGAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATA 36515 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||||| || ||| || |||||||| || || | | |||||||| || |||| Sbjct 36516 CTTTGGAT-CGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTT 36574 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA-GGAACGC--ACGTAGGTGTCGATGA 133180 | || ||| || ||| | |||| ||| | ||| | | ||| || || || | Sbjct 36575 CAATCGCGCACAGTAAATGCTGTTT---TTCAGTTGGATCTTTGATGTATGTATCAATCA 36631 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 |||||||| ||||||||||| || || || || |||||||| ||||||||||| | Sbjct 36632 ATAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATC 36691 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 | || ||| | ||| || || |||| | | | |||||||| ||||| || | Sbjct 36692 GAGCTTCGGGGATCTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTGACAATTC 36751 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || ||||| || || ||||||| |||||| ||||| || || | || ||||| | Sbjct 36752 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATA 36811 Query 133361 AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 |||||| | |||| | || || | || || |||||||||| | Sbjct 36812 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 36871 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| ||||| || ||||| ||| || || || | |||||| ||||| | ||||| | Sbjct 36872 CCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGC 36931 Query 133481 GGCGGGGGTTTTCGCG 133496 || || ||||| || Sbjct 36932 GGTTCGGATTTTCTCG 36947 >seq226 Length=41712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || ||||| || ||||| ||||| | || ||||| | Sbjct 24308 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 24249 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | || | || || | ||||| || |||||||| |||| Sbjct 24248 ATCCGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 24189 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || ||||| |||| |||| || || ||| || || Sbjct 24188 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 24129 Query 38420 CAACATCCAAAA 38431 |||||||||||| Sbjct 24128 CAACATCCAAAA 24117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500140188733440