Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq101 123 3e-23 >seq101 Length=75748 Score = 123 bits (136), Expect = 3e-23 Identities = 273/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 |||||||| ||||| ||| ||| || |||||||| ||||| || || || ||||| Sbjct 26194 AATGTATGCTTGATTCCAATGTCTGCTCATGGAACGAATCCAGCTAGTGCGGTAATGGCT 26135 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGA-CATCAAAGATCT 159506 |||||||||||||| | ||| ||| || || | || || || || | || | ||| | Sbjct 26134 GGGATGAAAGTTGTGGTCGTCCAGTCAGACGACAAGGGGAATATCGATCGTC-AGGATTT 26076 Query 159507 AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATC 159566 ||| || ||||| | | | | || |||| || | | ||||| || || ||||| Sbjct 26075 AGAAAACAAAGCGAAAAAGCACGCAAATGAATTGAGTGCTCTCATGATCACCTACCCATC 26016 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG-ATTG-TTCATGAGAAT 159624 || ||||||| || | | ||| | | |||||| | | |||| | || | || Sbjct 26015 CACGTATGGTGTCTTCG-AGCAAGGAGTCCA-AGATATCTGCGCATTGATCCACTCGTAT 25958 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCT-AGCAAAACC 159683 ||||| || || || | ||||| || ||| | |||||||| || || || |||| | Sbjct 25957 GGTGGCCAAGTGTACATGGATGGAGCGAATATGAATGCACAAGTCGGCCTGTGCAATCCG 25898 Query 159684 ATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACA 159743 | | | ||| || ||||| || ||||| || | || || |||||||| || || || Sbjct 25897 AAAT-CCATTGGAGCTGATGTCTGCCATCTCAATCTCCACAAAACATTCTGCATCCCTCA 25839 Query 159744 TGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 || ||||| ||||| || || || | ||||| ||||| Sbjct 25838 CGGTGGTGGTGGTCCAGGAGTTGGAACCATTGGCGTAGC 25800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||| || ||| |||||||||| | || || || || ||| | || ||| Sbjct 27757 ATCGGCCAAGGGTATCATGACTGCATCACACCCGCGGTTATCCAACGTAACATGCTGGAG 27698 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| | ||||| ||| | || || || || ||||||||||| || || || ||||| Sbjct 27697 AATCCGGGCTGGTATACAGCGTATACGCCGTACCAAGCTGAGATCTCACAAGGTCGATTG 27638 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | | |||| ||| || | | ||| ||||||||| | | | || Sbjct 27637 GAAATGCTGCTGAATTTCCAGACAATGGTTCAAGATCTCACAGGATTGGGATTCTCGAAT 27578 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || ||||||||||| || || ||||| ||||||||| Sbjct 27577 GCGTCACTTTTAGATGAAGCGACAGCTGCAGCTGAAGCAATG 27536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588012859061760