Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq23 327 1e-84 seq271 185 1e-41 >seq23 Length=155023 Score = 327 bits (362), Expect = 1e-84 Identities = 624/907 (69%), Gaps = 14/907 (2%) Strand=Plus/Plus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCA 18733 |||||| |||| | ||| ||||| || || |||||||| | | || || ||| |||| Sbjct 36060 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAAT-CATATCCA 36118 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTC 18793 | | ||||| ||||| | | ||||| || ||| || | | | || | || Sbjct 36119 TCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATC 36178 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| ||||| | || ||| ||||| | |||||||||| |||| | | Sbjct 36179 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 36238 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || |||| |||| | |||||||||||| || | || || || || || || | Sbjct 36239 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 36298 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA--ACATCAAACATGCAAAATC 18971 || |||| | | || ||| | | || | |||||| ||||||||| || Sbjct 36299 GAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAGTC 36356 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||||||||| || || | ||| || | ||||| ||||| | |||||||||| Sbjct 36357 ACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAA 36416 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTA 19090 ||||| ||| || | ||| |||||||| ||| |||||||| || || || || ||||| | Sbjct 36417 TCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTCGA 36475 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTC 19149 | || ||||| || || | ||||||| || ||| || ||| || || ||||||| Sbjct 36476 CGGCCGCAAAGGCTACCACTCTTTCTGCA-AACGAGGCATACTTTGGATCGCACCATTTC 36534 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| | || || || | || || || ||||| || || | | || || | Sbjct 36535 AACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGC 36594 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 ||| || |||||| | |||| ||| |||||||| |||| ||| || || Sbjct 36595 TGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGT 36654 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 ||||||||||| || || |||||||||||||| |||| ||||| | ||||| || ||| Sbjct 36655 ATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA 36714 Query 19330 CTAC--AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | ||| || | | | | ||||||||| || ||||||||||| |||||||| || | Sbjct 36715 CTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGG 36772 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | || || ||||| ||||| ||| |||||| | || || ||| ||||| || | Sbjct 36773 CCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATGT 36832 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | | ||||| | |||||| | |||||||| ||||||||||| |||||||||| Sbjct 36833 CATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATGT 36892 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| || ||| | |||||| ||||||| ||||| | || ||||||| ||||| Sbjct 36893 CCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAAGAA 36952 Query 19568 TAGGTTC 19574 |||||| Sbjct 36953 AAGGTTC 36959 >seq271 Length=35139 Score = 185 bits (204), Expect = 1e-41 Identities = 418/626 (67%), Gaps = 2/626 (0%) Strand=Plus/Plus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| || ||||||||||| ||| ||||| | || || | ||||| Sbjct 30543 TCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCAT 30602 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| | ||||| ||||| || | ||||| || ||||| || |||| || Sbjct 30603 TTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGAT 30662 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | ||| || || ||| |||||||| | |||| || || | | Sbjct 30663 AAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCAT 30722 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | |||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 30723 TGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAAC 30782 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | | | | ||||| ||| | || ||||| || ||| || || || Sbjct 30783 TGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATAC 30842 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || || ||||| || || ||| ||||||| ||| ||||| Sbjct 30843 ACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATA 30902 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || ||||| | ||| || | || |||| ||||| Sbjct 30903 GAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCAT 30962 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| | || | ||| | || ||| ||||| | ||| | || | || | || Sbjct 30963 GCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTT 31022 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGTTA 48749 ||||| || | || || ||||||| ||||| ||| || | |||| ||| |||| | Sbjct 31023 TGTGTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCA 31081 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || | ||| ||||| ||||| |||| |||||||| |||||||||| ||| |||| Sbjct 31082 TTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAG 31141 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 || ||||| ||||||| ||||| Sbjct 31142 TCTCTATCACCGATAATTGCGGAATT 31167 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 |||||| | ||| ||||| || ||||| | |||| ||||| | ||||||||||| Sbjct 29338 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 29397 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 ||| | |||| | | || || | ||| |||||||| || |||||||||||| ||| Sbjct 29398 AGTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 29457 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | || |||| ||| || ||||| || ||||| || |||| || ||||| ||||| Sbjct 29458 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 29517 Query 47192 TTTATAAATTTGTTT 47206 ||| || ||| ||| Sbjct 29518 TTTGTACTTTTCTTT 29532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562072150506240