Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 201 9e-46 seq45 197 1e-44 seq116 125 6e-23 seq425 120 2e-21 seq113 102 7e-16 seq1 93.3 3e-13 >seq7 Length=223839 Score = 201 bits (222), Expect = 9e-46 Identities = 411/603 (68%), Gaps = 17/603 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| ||| | || || || || ||||| ||||| |||||||||| | Sbjct 47187 AGCAATTGGTATTGATCTTGGTACAACTTACTCATGTGTGGGTGTCTGGCAAAATGATCG 47246 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||||||||| || || ||||| ||| |||| ||||| || || ||| ||||||| Sbjct 47247 AGTCGAAATTATTGCTAACGACCAAGGAAACCGAACCACTCCGTCCTACGTTGCTTTCAC 47306 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||||| | | |||||||||| || ||| | || ||||| || || | | Sbjct 47307 CGACACTGAACGTCTTATTGGTGATGCCGCTAAAAACCAAGTAGCCA-TG--AACGCAGC 47363 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || || | || || || |||||||| ||||| ||| |||| || | | || || Sbjct 47364 AAACACCGTCTTCGACGCCAAACGTTTGATTGGTCGAACTTTTTCGGACCCAATCGTCCA 47423 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGG---AAAACCTTATAT 550284 || || |||||||| ||||| ||| | || || | |||| || || | || Sbjct 47424 AGCTGACATGAAGCACTGGCCATTCACAGTTCAAAACGGACCTGGCAACAAGCCCTTGAT 47483 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTC-ACCAGAACAAATTTCATCTATGG 550343 |||| || | | |||| | || | ||||| ||| ||| ||||||| || |||| Sbjct 47484 CGAAGTCAC-CTTTAAGGGTGAAAAGAAAATTTTTCAACCTGAAGAAATTTCCTCAATGG 47542 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 | | | || ||| || | || | | || | |||| | | |||| | Sbjct 47543 TGCTCGTAAAGATGCGTGAAGTCTCTGAAGCGTACATCGGAAAGCAAGTGAAGAATGCCG 47602 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || ||||||||||| || || || || |||||||||||||| ||||| || || Sbjct 47603 TCATCACCGTACCAGCATACTTCAACGATTCCCAACGTCAAGCTACCAAAGACGCGGGTG 47662 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || || || | || || ||||| || ||||||||||| ||||| ||||| |||| | Sbjct 47663 CGATCGCCGGTTTGAACGTGCTTCGAATCATCAATGAACCAACTGCAGCTGCCATTGCGT 47722 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAG 550580 | || | || | | || | ||||||| ||||| |||||||| || | |||||| Sbjct 47723 ACGGTTTAGAGA---AGAAAGGTCAAGAATGCAATGTGCTCATCTTCGATCTTGGTGGAG 47779 Query 550581 GTA 550583 ||| Sbjct 47780 GTA 47782 >seq45 Length=119008 Score = 197 bits (218), Expect = 1e-44 Identities = 377/546 (69%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052 || |||| || ||| | ||||| || || || |||||||| |||||||||| | || Sbjct 89992 CTGTAGGCATTGATCTTGGAACAACGTACTCATGCGTTGGTGTGTGGCAAAATGATCGAG 89933 Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 | || || ||||| |||||||| || || |||| || || || ||||| |||| || | Sbjct 89932 TCGAGATCATTGCGAATGATCAGGGAAATCGAACGACACCTTCGTATGTCGCTTTTACAG 89873 Query 550113 AAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 | || || | | | | ||||||| ||||| || | |||| || ||| | || || Sbjct 89872 ATACGGAGAGACTGA-TTGGTGACGCAGCGAAGAACCAAGTGGCTATGAATGCAACAAAC 89814 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||| || || ||||| || ||||| || ||| || |||| | ||||| || Sbjct 89813 ACTGTTTTCGACGCGAAACGATTGATTGGTCGACGTTGTAGTGATCCTGTGGTTCAAGCT 89754 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GAAAACCTTATATTGA-- 550287 ||||| || |||||||||||| || |||| | | || | | || | ||| Sbjct 89753 GATATCAAACATTGGCCTTTCAAA---GTTACTTCTAGTGAAGGAGACAAGACGATGATT 89697 Query 550288 AGCTACTCAT--GAAGGATCTGTTAAACAAT--TTTC-ACCAGAACAAATTTCATCTATG 550342 | | | || |||| || | | ||| |||| ||| ||| | || || || ||| Sbjct 89696 ACCGTCCAATACAAAGG---TGAAACAAAATCCTTTCGACCGGAAGAGATATCTTCAATG 89640 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 |||||||| ||||||| | ||| ||| |||||| | ||| |||| || | | || Sbjct 89639 GTTTTAATCAAAATGAGAGAAATTGCCGAAGCTTTTCTCGGTAAAGATGTCAAAAACGCG 89580 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || |||||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 89579 GTTATTACTGTACCTGCATACTTTAATGACTCGCAGCGTCAGGCGACCAAGGACGCAGGC 89520 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||| || | ||||| || ||||| || ||||| || ||||| || || | || Sbjct 89519 GCGATTGCAGGGTTAAATGTGCTGCGTATAATTAATGAGCCAACTGCAGCGGCTATCGCG 89460 Query 550523 TATGGA 550528 |||||| Sbjct 89459 TATGGA 89454 Score = 181 bits (200), Expect = 9e-40 Identities = 564/857 (66%), Gaps = 37/857 (4%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| ||| | ||| | || || ||||||||||||||| |||| || ||||| | |||| Sbjct 89340 TGGTGATACACATTTGGGCGGAGAAGATTTTGATAATCGACTAGTCGATCAT--TTTGTT 89283 Query 551847 GAAGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATCTGCCAAAG--CTCTTCG 551902 | || || || |||| | |||| ||| | | ||| | ||| | | ||||| Sbjct 89282 GCCGAATTCAACAGAAAGCATCGAAAG--GATATTACAACAAAT--CAACGTGCACTTCG 89227 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAAC-CA 551961 |||||| | || ||||| || |||| || || | ||||| || ||||| | || Sbjct 89226 CCGTCTACGCACAGCTTGTGAGCGAGCAAAGCGCACCCTTTCTTCATCCGCTCAAGCACA 89167 Query 551962 CTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCA 552021 | |||||| | || || | || |||||| | |||| ||| | | || ||||||| Sbjct 89166 C-ATTGAAATTGACTCGCTGTTCGAGGGAGTGGATTTCAATTCTACAATCACGAGGGCAC 89108 Query 552022 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT 552081 ||| |||||| | ||| | ||| ||| | |||||| |||||||| || | || | Sbjct 89107 GATTCGAAGATTTATGTGCAGATTACTTCCGTCGAACAATGGAACCAGTGGAGAAGGTGT 89048 Query 552082 TAAGAGATTCAAAGATTG--ATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| || |||| | ||| || || || ||| |||| || || ||||| || Sbjct 89047 TGCGTGATTCTAA-ATTGTCAAAAAGTCAG-GTGCACGAAGTTGTACTCGTGGGTGGCTC 88990 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTA---TTTCAATGGTAAAAAATT 552196 || | ||||||||| | | || | || ||| | |||||| ||||| |||| Sbjct 88989 GACTCGTATTCCTAAAGTGC---AACAGCTATTGTCTGAGTTTTTCAACGGTAAGGAATT 88933 Query 552197 AAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254 || |||| | || || || || || || || | |||||| | | ||||| || Sbjct 88932 G--TGCAAGTCGATAAACCCGGACGAAGCCGTCGCTTTTGGTGCAACTGTACAAGCCGCC 88875 Query 552255 ATTCTTTCTGGACAAACTGAT------GAAAAACTACAAAATATTGTACTTGTAGATGTT 552308 ||| | |||| ||||| ||||| || || || | |||| | |||||| Sbjct 88874 ATTTTAAGTGGA---ACTGAGCAATCCGAAAAGCTGCAGGATCTATTACTATTGGATGTT 88818 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 |||| || || || || | || |||| || || | ||||| | || ||| | Sbjct 88817 GCTCCGCTGTCGCTGGGACTTGAGACAGCGGGTGGAGTGATGACCACACTGATCCCACGT 88758 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||| || | ||| ||||| |||| | ||||| || || ||| || || | Sbjct 88757 AATACCACGCTACCTACGAAAAAGTCTCAAATGTTTTCAACATACCAAGAAAACCAGCCA 88698 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | ||| || ||| | ||||| ||||| | | ||| || || || | || Sbjct 88697 GGTGTATGCATACAAGTATTTGAGGGAGAGCGCTCCATGACTCGGGACAACAACCTTCTC 88638 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || ||| | || || || || || || || || ||||| ||||||||||| Sbjct 88637 GGAAAGTTCAATCTTGACGGAATACCGCCCATGCCGCGCGGTGTACCTCAAATTGAAGTC 88578 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAAC 552608 || |||||||||||||||||||||||||||||||| | || || ||||| | |||| Sbjct 88577 ACATTCGATATCGATGCCAATGGAATTTTGAATGTAAGCGCGATCGAGAAATCGACCAAC 88518 Query 552609 AAGAGTAAAAATATTAC 552625 ||| || || ||||| Sbjct 88517 AAGGAAAATAAGATTAC 88501 >seq116 Length=69695 Score = 125 bits (138), Expect = 6e-23 Identities = 393/599 (66%), Gaps = 20/599 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||| ||||| ||| | ||||||||||| ||||| ||||| ||| || |||| | Sbjct 41300 AGTTATTGGTATCGATCTGGGAACCACATACTCCTGTGTGGGTGTATGGAAAGATGGCCA 41241 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||| ||| | |||| ||| | || || || |||| || | || || Sbjct 41240 AGTAGAGATCATTGCTAATACTGAAGGAAACCGTACAACGCCTTCTTGGGTCGCATTTAC 41181 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAG-CAAAATATCAAGCCACTGGTAATCCTACCA 550169 || | || | || ||||||| |||| ||||||| ||||| || || || || | Sbjct 41180 CGACAGCGAGCGATTGATTGGTGAGGCAGCCAAAATA-CAAGCGGCTTCCAACCCAACAA 41122 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | ||| |||| || || || ||| | ||||| ||||||||| ||| |||| || Sbjct 41121 ACACTGTTTTCGACGCGAAGCGTATTATTGGTAGAAGTTTTGCCGATGAAGCTGTGCAAC 41062 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGT---TAATGTTTCTGGAAAAC--CTTATAT 550284 ||| |||||| || ||| |||| || || | || |||| ||||| Sbjct 41061 GTGATGCTCAGCATTTCCCATTCAAAATCGTATCGGGTGATGGTGACAAACCACTTATTC 41002 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | | | ||| || || ||||| || |||| ||| |||| || ||||||| Sbjct 41001 AGGTGGAATTCAAAAAAGA--GACAAAACAGTTCACACCTGAAGAAATCTCTGCTATGGT 40944 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | | ||||||| |||| || || | | || || | | | || || Sbjct 40943 GCTCACGCGAATGAAAGAAACCGCTGAAGCATACCTCGGACAGCCCATCAAACAAGCGGT 40884 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | || || || || ||||| |||||| ||||||||| | || |||||||| ||| Sbjct 40883 TGTGACCGTCCCTGCGTATTTCAATGACCACCAACGTCAATCGACCAAAGATGCCGGATC 40824 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 |||||||| | | || || || |||||||| || ||||| ||||| | || || Sbjct 40823 GATTGCTGGTTTAGACGTGAAGCGAATCATCAATGAGCCCACTGCAGCTGCCTTGGCGTA 40764 Query 550525 TGGACTTGATA--AAC-----ATAATGAT--CAAGAACT-TAATGTACTCATCTTTGAT 550573 || ||||| | ||| || |||| ||| || |||||| |||||||||||| Sbjct 40763 CGGTCTTGACACCAACGCTGGAT-CTGATGGCAAAGCCTGTAATGTGCTCATCTTTGAT 40706 >seq425 Length=20423 Score = 120 bits (132), Expect = 2e-21 Identities = 365/553 (66%), Gaps = 17/553 (3%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| || || || || ||||||||||| |||||||| || || | || ||||| Sbjct 7528 TATTGGAATCGACTTGGGAACCACATACAGTTGTGTCGGATATTACAAGAACAAGAAAGT 7587 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||| || | ||||| ||||| || | || || || || || ||||| | Sbjct 7588 GGAAATCATCCCAAATGAGCAAGGAAATCGTGTCACCCCGTCCTACGTGGCTTTCGACGC 7647 Query 550114 AACTG-AAC---ATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCT-ACC 550168 |||| ||| ||| | | |||||||| || || |||||||| | || || | | Sbjct 7648 GACTGGAACTCGATTGA-TCGGTGATGCGGCCAAGAATCAAGCCGTTCACAACCCCGAGC 7706 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || ||||| || | ||||| | ||||| ||| |||| || | ||||| Sbjct 7707 AA-ACGATTTTCGACGTGAAACGACTTATTGGTCGAAAGTTTACGGACAAATCCGTTCAA 7765 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||||| | ||||| || | | | ||| | || ||||| || | ||| Sbjct 7766 GCAGACAAGAAGCTACTTCCGTACGAGATTATCAACAAAGACGGAAAGCCATTCATTCGC 7825 Query 550289 GCTACTCATGAAGG---ATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | ||| |||||| | | | ||| || |||| ||| |||| || | |||||| Sbjct 7826 GTTACAG-TGAAGGGAGAACAG--AAAGTTTTCGCACCTGAAGAAATCTCGGCCATGGTT 7882 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAG 550403 | ||||||||| | | || || |||| || || || | |||||| | Sbjct 7883 CTCCAGAAAATGAAGGATATTGCTGAGAAAGTTATTGG--AACAACTGTGAAGGATGCTG 7940 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | | ||||| ||||||||||| || || | ||||||||||| || |||||||||||| Sbjct 7941 TGGTCACTGTCCCAGCATATTTCAACGATGCTCAACGTCAAGCAACCAAAGATGCTGGAT 8000 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||| |||||| | | |||| ||||| |||||||| || || |||||||| |||| | Sbjct 8001 CTATCGCTGGATTGACCGTTCAACGTATCATCAATGAGCCAACAGCTGCTGCGATTGCTT 8060 Query 550524 ATGGACTTGATAA 550536 ||||| |||| || Sbjct 8061 ATGGAATTGACAA 8073 >seq113 Length=71740 Score = 102 bits (112), Expect = 7e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| ||||| | || || || | ||||| | || ||| | | ||||| || || Sbjct 30452 GATGTGACTCCATTGTCGCTCGGAATTGAAACGTTAGGCGGTGTGTTCACTAAACTGATA 30393 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 |||| || || |||||| ||||| || | ||||| |||||| | ||| Sbjct 30392 CCGCGAAACACAACCATTCCTACAAAAAAGTCGCAGGTATTCTCTACGGCCGCGGATTCA 30333 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || ||| ||| || || | || | || ||| || || | || |||||| || Sbjct 30332 CAGACTCAAGTTGGTATCAAAGTGTTACAGGGCGAACGAGAAATGGCTGCAGATAACAAA 30273 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || | ||| |||| | ||| ||||| ||||| || ||||| ||||| |||||| Sbjct 30272 TCGCTCGGAAACTTTGATTTGGTAGGAATTCCACCTGCACCGCGTGGTGTACCTCAAATT 30213 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||| | |||||||||||||| ||||| || ||||||| Sbjct 30212 GAAGTATCGTTCGATATCGATGCGAATGGTATCGTGAATGT 30172 >seq1 Length=398508 Score = 93.3 bits (102), Expect = 3e-13 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||||||||||||||||||||| || | ||| || ||||||||||||||||| || Sbjct 11248 TCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 11307 Query 563380 TCTTGAATTTT 563390 |||||||| || Sbjct 11308 TCTTGAATCTT 11318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029020154395840