Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq101 123 3e-23 >seq101 Length=75748 Score = 123 bits (136), Expect = 3e-23 Identities = 273/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 ||||| ||||| | || || || ||||| ||||| || || || || |||||||| || Sbjct 25800 GCTACGCCAATGGTTCCAACTCCTGGACCACCACCACCGTGAGGGATGCAGAATGTTTTG 25859 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCT-AGACCTACCTG 138298 || | ||| ||||| || ||||| || ||| | | | | |||| || || || || Sbjct 25860 TGGAGATTGAGATGGCAGACATCAGCTCCAATGG-ATTTCGGATTGCACAGGCCGACTTG 25918 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA-CGAT-CTTA 138356 |||||| | ||| || ||||| | || || || ||||||| || | | || | | Sbjct 25919 TGCATTCATATTCGCTCCATCCATGTACACTTGGCCACCATACGAGTGGATCAATGCGCA 25978 Query 138357 CATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 |||||| | | ||| | | || ||||||| || ||||| || || ||||| | | Sbjct 25979 GATATCT-TGGACTCCTTGCT-CGAAGACACCATACGTGGATGGGTAGGTGATCATGAGA 26036 Query 138417 CATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATG-TCTATGTT 138475 | |||| || | | | | ||||| || |||| ||| | || | || || || Sbjct 26037 GCACTCAATTCATTTGCGTGCTTTTTCGCTTTGTTTTCTAAATCCT-GACGATCGATATT 26095 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 || | || || ||| ||| | ||||||||||| || ||||| || |||||||| || Sbjct 26096 CCCCTTGTCGTCTGACTGGACGACCACAACTTTCATCCCAGCCATTACCGCACTAGCTGG 26155 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 ||| |||||||| || ||| ||| |||| |||||||| Sbjct 26156 ATTCGTTCCATGAGCAGACATTGGAATCAAGCATACATT 26194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || ||||| || || ||||||||||| || || || || | | | ||||| Sbjct 27536 CATTGCTTCAGCTGCAGCTGTCGCTTCATCTAAAAGTGACGCATTCGAGAATCCCAATCC 27595 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || ||| | | || ||| |||| | | |||||||| || || || || Sbjct 27596 TGTGAGATCTTGAACCATTGTCTGGAAATTCAGCAGCATTTCCAATCGACCTTGTGAGAT 27655 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| || || || || | ||| ||||| | |||||||| || | ||| || || Sbjct 27656 CTCAGCTTGGTACGGCGTATACGCTGTATACCAGCCCGGATTCTCCAGCATGTTACGTTG 27715 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 || || | |||||| ||| ||| || ||||| || || Sbjct 27716 GATAACCGCGGGTGTGATGCAGTCATGATACCCTTGGCCGAT 27757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578960649304320