Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq226 109 1e-18 seq1 91.5 3e-13 >seq226 Length=41712 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||| || || ||||| || | ||||||||| || || |||||||| | Sbjct 24148 CGTCCTCCAATTGTTTTCCTGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCT 24207 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || |||||| || || || || ||||| || || ||||| | Sbjct 24208 TGTCTTGAATCTTCGCCTTCACATTATCGATCGTGTCGGATGATTCGACCTCAAGAGTGA 24267 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | ||||| || || | ||| || | ||| ||||||||| Sbjct 24268 TTGTTTTCCCGGTGAGTGTCTTGACGAAAATCTGCATT 24305 >seq1 Length=398508 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||| || |||||||||| | ||||||||||| || |||||||| | Sbjct 11246 CGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCT 11305 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || | || ||||| || || || | ||||||||||| || |||| Sbjct 11306 TGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTAA 11365 Query 172033 TGGTTTTACC 172042 | ||||| || Sbjct 11366 TTGTTTTTCC 11375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905076985132800