Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq271 179 1e-39 seq250 96.9 1e-14 seq236 91.5 4e-13 seq29 84.2 6e-11 >seq271 Length=35139 Score = 179 bits (198), Expect = 1e-39 Identities = 284/405 (70%), Gaps = 9/405 (2%) Strand=Plus/Plus Query 155973 TCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032 |||| || |||||||| ||||| || | || || ||||| | || ||||| Sbjct 30599 TCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCT 30658 Query 156033 AGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTC 156089 ||||| || |||||| || |||| ||| ||||| ||||| || || ||||| || Sbjct 30659 AGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTG 30718 Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATA 156149 | |||||| || | ||||| |||| ||| ||||| ||| | ||||| || ||||||||| Sbjct 30719 TCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATA 30778 Query 156150 TGCGAACCA---GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 | ||| | ||||||| ||| |||| | |||||||| || | ||| || Sbjct 30779 T---AACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTT 30835 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 ||||| || |||| || | || | | |||| || || ||||||||||||| ||| Sbjct 30836 GAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATG 30895 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 |||| |||| | ||||| |||||| ||||| || ||||| || ||||| || || || Sbjct 30896 GATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGA 30955 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 |||||||| |||| |||| | ||||| | || || || ||| Sbjct 30956 GTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 31000 >seq250 Length=37561 Score = 96.9 bits (106), Expect = 1e-14 Identities = 416/644 (65%), Gaps = 18/644 (3%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 || |||| ||||| ||| ||| || || |||| ||| ||||| || | || || ||| Sbjct 20473 GCAATAATTCCACAGATATCACAAACGTGAACGCGGTACGCATCCGAATTCG-CAAATAA 20531 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| || | ||| | || ||||||||||||| |||||| |||||||||||||| Sbjct 20532 TCGATCCATAAGGAAATTCGCTGATCCGTGTGAAATCAAACAATCTCGCTCCATTTCACC 20591 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| | || || || || || || ||||| || || || || || | || Sbjct 20592 CATACGTAATCCTCCTTCCCGCGCTCTTCCCTCCATCGGTTGTCGCGTTAGCATTGTCAC 20651 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| || || ||| ||||||| ||||||||||| | ||||| ||||| Sbjct 20652 TGGACCCCGAGACCGCGAGTGTATTTTATCATCAACCATATGCTTTAACCGCTGATAGAA 20711 Query 251643 TGCGGGACCGATGAAGATGCTCGAAGGCATTT---GCTC-TCCAGTTAGAGCGTTATACA 251698 || || || ||||| || || || || || | || || || | | |||||| Sbjct 20712 TGTCGGTCCAATGAAAAT-CT-GA--GCGGTTAACGGTCGACCTGTGTGTCCACTATACA 20767 Query 251699 TAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATC-ACCA 251757 || ||||| |||| || || || || || |||| | ||||| | || Sbjct 20768 AGACCTCGTTCCCATGTCGTTGGTACCCTAGGTTATGTAACGTATCCGCAATCGCTTGCA 20827 Query 251758 ATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817 | | | || |||| || | || || | ||| | || | ||||| Sbjct 20828 CTGTAACGTCTG-TAAACGGAGTCGCATCGCCCTCGTCGCCCGTCTGTGCGGATACTTTT 20886 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 || || | ||| | | || ||| |||||| ||| ||||| ||||| ||||| Sbjct 20887 CCCAATAAACACTCAATTAAGTGACCGACAGTCATTCGAGACGGAATTGCATGTGGATTC 20946 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATA- 251934 | || ||||||||| | | ||| || ||| || |||||||| |||| || ||| Sbjct 20947 ACTATAATGTCGGGTGTAATTCCTTCCAAAGTAAACGGCATATC---TTCCTGTCGATAG 21003 Query 251935 ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGA 251994 | ||||||| ||||| ||||| |||||||| || || ||||| ||||| ||| Sbjct 21004 GTCATTCCAATCGTTCCTTTTTGCCCGTGACGTGATGCAAATTTATCGCCAATTTGCGGA 21063 Query 251995 CGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATC 252038 |||| | |||||| || || ||| ||| ||| | ||||| Sbjct 21064 ATTCGAATATTACGAAATCGTACTTTAGTGAATTTGAACCCATC 21107 >seq236 Length=40004 Score = 91.5 bits (100), Expect = 4e-13 Identities = 201/299 (67%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || | ||| |||||||||||| |||| | | ||| | ||| ||| Sbjct 38997 TGATTAAGAGTGTTTTCTCTTTCATCATTTCCACCTGAGAACTGGCCC---TTGCTTCTT 39053 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | |||||||||| || ||||| ||||| | | || || | ||| || || Sbjct 39054 GTGCGAGCAACAGCATCGATCTCGTCGATGAAGACAATGCAGGGCGCGTTTGCTCGAGCT 39113 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || |||| ||||| |||| || | || ||| |||| || | ||| || Sbjct 39114 TCTCGAAACAAGTCTCGCACACGTGATGGACCCACCCCCACAAACATCTCAATAAAATCG 39173 Query 289144 GAAGCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| || |||||| || || | || | || || ||||| ||| ||||||||| Sbjct 39174 GAACCGGAGATACTGTAA--AACGGAACGCTGGCCTCTCCTGCAGTAGCCTTCGCCAGAA 39231 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | || || || ||||| ||||| || | | || |||| ||||| | |||||| ||| Sbjct 39232 GCGTTTTTCCGGTTCCTGGTGGACCAACAAGTAATGCTCCTTTTGGAATTTTTGCACCA 39290 >seq29 Length=140563 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 353971 TGAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGC 354030 || || || |||| ||||| ||| | || || ||| || | || |||||||| || Sbjct 69733 TGTGAGATCATAACAACACCTCCACCAAAGTTCACAATAGCGGCAGCAAGAGCACCCAGT 69792 Query 354031 GAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCAC 354090 || || || || || |||| || ||||||||||||| | |||||| || || |||| Sbjct 69793 GAATCGCGATCCAGATAATTCGTTGGTTCGTCAAGGACTAAAACGTGAGGAAACAGCCAC 69852 Query 354091 ATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || ||||| | || || | ||| || ||||| || || ||||| Sbjct 69853 ATGGCTGCTCCAAGGACCAACTTGACTTTCTGACCACCGGATAG 69896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471719238429792