Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq271 82.4 7e-11 >seq1 Length=398508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| ||||| |||||||||||| | | ||||| | || | || || ||| Sbjct 11375 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 11316 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || |||||||| |||||||| ||||| || ||||||||| | || |||||||| ||||| Sbjct 11315 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 11256 Query 24851 CTGGAGGA 24858 || || || Sbjct 11255 CTTGAAGA 11248 >seq271 Length=35139 Score = 82.4 bits (90), Expect = 7e-11 Identities = 278/426 (65%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 138193 GTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAA 138252 |||| ||||| |||||||| || || | || |||| ||| ||||| | || |||||| Sbjct 29339 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 29398 Query 138253 GTGAGTAACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATG 138312 |||||| | |||||| | || | || || | |||||||||||| ||| Sbjct 29399 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 29458 Query 138313 AAAGCGCCTCGATCAATGGCCATGTTAATTAAAT----TTTTACTTTTCATCTCCCACAC 138368 | || |||||||| ||||||| | |||| |||| | || || ||||| || Sbjct 29459 TACGCTCCTCGATCGGCAGCCATGTCCA--AAATCGCCTTTTGC--TTGATTTCCCAAAC 29514 Query 138369 GGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTT 138428 || ||||| || | ||| |||| ||| || |||||||| | | ||| Sbjct 29515 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCG-C 29573 Query 138429 GGCCGC-AATGATGCGATTTCTCATGTCATCGTTGT--ACAGATTCAACTTGATCAAGTC 138485 | ||| || ||| |||| | | ||| | ||| ||| ||||| || || | || Sbjct 29574 GATCGCGAAGGATTTGATTCCGAACGTC--TGATGTCCACAAATTCATCTCAATAAGCTC 29631 Query 138486 GTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAAT 138545 | || |||||| |||| | | |||||| || || | || || ||| | | || Sbjct 29632 TTCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACAT 29691 Query 138546 GTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGT 138605 |||| ||||| ||||| | || ||| || || ||||| |||||||| | ||||| Sbjct 29692 GTTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGT 29751 Query 138606 CGGCAT 138611 ||||| Sbjct 29752 TGGCAT 29757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868266676480