Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq188 98.7 2e-14 seq23 98.7 2e-14 >seq188 Length=48976 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| || ||||| || || || |||||||| |||||| ||| || ||| || Sbjct 14900 TTGGTGACTGCTTTGGTTCCTTCAGAAACGGCGTGTTTGGCCAATTCACCTGGCAGCATA 14959 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGTGCGCG 1485592 || || |||| || ||||| || || | ||| | || || || |||||| || | Sbjct 14960 AGTCGTACGGATGTTTGGATTTCACGACT--CGAAAGAGTAGCCTTCTGGTTAGTTCGTG 15017 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 || || || |||||| | || || || | || ||||||| ||| |||||||||| Sbjct 15018 ACAATTTTCCTGCTTCGGTGGCAATTCGTTCAAAAATATCGTTGATAAAGGAGTTCATGA 15077 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||||| | | || || || || || |||||||| || ||||||||||||| Sbjct 15078 TGGACATTGCGCGTCTTGAAATTCCAACTTCTGGGTGCACTTGGCGCAGCACCTTGTAAA 15137 >seq23 Length=155023 Score = 98.7 bits (108), Expect = 2e-14 Identities = 219/328 (67%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||| | || || |||||| || || ||||| | || || ||| Sbjct 36367 CCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCTCGTTTC 36426 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || |||||||| || | ||||| || ||||||||||| || |||||||| |||||| Sbjct 36427 TTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCCGCAAAG 36486 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCC 794518 | || | | || ||||| | |||| ||||| | | ||| |||| ||||| Sbjct 36487 GCTACCACTCTTTCTGCAAA-----CGAGGCATACTTTGGATCGCACCATTTCAACGCCC 36541 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||| || || | || | || | || || || |||| | | || | || | Sbjct 36542 ATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGCTGTTTTT 36601 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || || |||| ||| || || || | | ||| || || ||||| || |||| Sbjct 36602 CAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTTT 36661 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || || || || || |||||||| Sbjct 36662 CTATTGCAATTTGAAATCCGTAAAAGCA 36689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915691550289824