Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_024146.1 Length=56702 Score E Sequences producing significant alignments: (Bits) Value seq134 113 2e-20 seq43 113 2e-20 >seq134 Length=61583 Score = 113 bits (124), Expect = 2e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 4244 GCAATCTGATTAGTCAGACGTTCTTGGACTTGCAAACGTCGAGCGAAAGCATCAACTACC 4303 || ||||| || || ||||||||||||||||| ||||||| || || |||| || Sbjct 1739 GCTATCTGCTTTGTAAGACGTTCTTGGACTTGTAAACGTCTCGCAAACACATCTGAGACT 1680 Query 4304 CGAGATAACTTGCTGAGACCGACGATTTTTCCATTTGGGACATACCCAACCACTGCATGA 4363 |||| ||||||||||| || | || || ||||| || | |||||||| | | | Sbjct 1679 CGAGCCAACTTGCTGAGTCCCAAGACCTTACCATTGGGAATATACCCAATGTGTACCTTC 1620 Query 4364 CCAATAATAGGAGCCATGTGATGCTCACAATGACTATATACAGGGATATCACGGACGATG 4423 || || | ||| | ||||||||||||||| | ||| | | |||||| || ||||| Sbjct 1619 CCGATGAAAGGCACAATGTGATGCTCACAAAGCGAATACAAATCGATATCGCGCACGATT 1560 Query 4424 ACCATTTCATCA 4435 |||||||| ||| Sbjct 1559 ACCATTTCGTCA 1548 >seq43 Length=120702 Score = 113 bits (124), Expect = 2e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 4244 GCAATCTGATTAGTCAGACGTTCTTGGACTTGCAAACGTCGAGCGAAAGCATCAACTACC 4303 || ||||| || || ||||||||||||||||| ||||||| || || |||| || Sbjct 87402 GCTATCTGCTTTGTAAGACGTTCTTGGACTTGTAAACGTCTCGCAAACACATCTGAGACT 87343 Query 4304 CGAGATAACTTGCTGAGACCGACGATTTTTCCATTTGGGACATACCCAACCACTGCATGA 4363 |||| ||||||||||| || | || || ||||| || | |||||||| | | | Sbjct 87342 CGAGCCAACTTGCTGAGTCCCAAGACCTTACCATTGGGAATATACCCAATGTGTACCTTC 87283 Query 4364 CCAATAATAGGAGCCATGTGATGCTCACAATGACTATATACAGGGATATCACGGACGATG 4423 || || | ||| | ||||||||||||||| | ||| | | |||||| || ||||| Sbjct 87282 CCGATGAAAGGCACAATGTGATGCTCACAAAGCGAATACAAATCGATATCGCGCACGATT 87223 Query 4424 ACCATTTCATCA 4435 |||||||| ||| Sbjct 87222 ACCATTTCGTCA 87211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181313568741888