Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 120 6e-22 seq226 113 9e-20 >seq1 Length=398508 Score = 120 bits (132), Expect = 6e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | | ||||||||| ||||||||||| ||||| ||||| | |||||| || ||||| Sbjct 11235 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 11294 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||||||||| ||||||||| ||||| || ||||| |||||||| || | ||||| Sbjct 11295 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTA 11353 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 |||| | || || || || ||| Sbjct 11354 CTTCGAGTGTAATTGTTTTTCCT 11376 >seq226 Length=41712 Score = 113 bits (124), Expect = 9e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || ||||| | || ||| ||||| || | ||||||||| || || | Sbjct 24115 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 24174 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | ||||| || ||||| ||||||||||| ||||||||||| || || ||||| | Sbjct 24175 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 24234 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||| || | ||| || || | ||| || || || || || | ||||| || | Sbjct 24235 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 24294 Query 82801 ATATCTGCATTATTA 82815 | ||||||||| ||| Sbjct 24295 AAATCTGCATTCTTA 24309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981761584488224