Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq271 150 4e-31 seq23 109 1e-18 seq2 96.9 8e-15 seq111 87.8 4e-12 >seq271 Length=35139 Score = 150 bits (166), Expect = 4e-31 Identities = 421/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 ||||||| | ||| | |||| |||| ||||||||||| || |||||||| || Sbjct 31158 ATTATCGGTGATA---GAGACTTTGATTACGACTATTTTGGCTTTAAAACTCTGGAGAAA 31102 Query 110331 GCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGT 110390 | ||| | | ||||| ||||| | | |||||| || ||||| ||| | | || Sbjct 31101 TCGTATCTGTTGCGTGTGAATGGAAAAGTGTGTGAACGCCCACAACATATGATAATGCGA 31042 Query 110391 GTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTA 110450 || || | || || || | | || | | || ||| | ||| ||||| | Sbjct 31041 GTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGTTTTGGAAACGTATGAACACAT- 30983 Query 110451 AGTAAAAAGAAAGCTATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 || | || ||| | || ||||| ||||| || || || || || ||||| | | Sbjct 30982 -GTCACAA--AAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCG 30926 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 | ||||| | || || ||||| || || | ||||||||||| || || ||||| Sbjct 30925 ACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTA 30866 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 || | || ||| || ||| |||||| || |||| || ||||| | | Sbjct 30865 CGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTAT 30806 Query 110627 TCATGATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | |||||||||| | | || | |||| | |||| || ||| | |||| Sbjct 30805 TTCCAATATTCGCTCCACCAACAGTTATATTCGCGGGA-CGAATGGAAGTTCGAATGGAA 30747 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 ||||||||||| | | || ||||| ||||| || ||| || ||||||| ||| | Sbjct 30746 TTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGCGGTGGGA 30687 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| || ||||| || || ||||| | ||||| ||||| || Sbjct 30686 AGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGGCACGCGGATATCTTTGAGTTTC 30627 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| ||||| ||| |||| || |||| || ||||| |||||||| Sbjct 30626 TGGAACTACGTAAGAATCATGGAAATGAACTCCATCGAGCTCGAGATTTGTTTTATGCTC 30567 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||| | ||| | || ||||||||||| |||| || Sbjct 30566 TTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGACAA 30527 >seq23 Length=155023 Score = 109 bits (120), Expect = 1e-18 Identities = 377/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| || |||| || ||| || |||||||||||| | | || ||| | Sbjct 36922 TATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTT 36863 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | ||||| |||||| || | || || |||| ||| || || | | Sbjct 36862 GGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATATCGGACA 36803 Query 131553 ATGAAAAAGATTTTGTTTCCAAA---GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 |||||| | | ||| | |||| || | || ||||| || | |||||||| |||| Sbjct 36802 ATGAAAGACACTTTAT---CAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATTG 36746 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 | | ||||||||| | || ||||||| || || | || || |||| || | Sbjct 36745 TCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGATGCT 36686 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | ||| ||||||| || | ||| ||| || || ||||||| |||||||||| Sbjct 36685 TTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTG 36626 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTC 131789 | | | ||| || | ||| ||| | | ||| | || | | | | | | Sbjct 36625 ATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAATCC 36566 Query 131790 C-TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGG----ATTCAAGATGATTCCGC 131844 | ||| ||| || |||||| ||||||| | |||||| || ||| | || || | Sbjct 36565 CGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGT-ATGCCTC 36508 Query 131845 TAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 ||| | |||| | ||||| ||||| || ||||| || || || || || | Sbjct 36507 G---TTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATC 36451 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 ||||| |||| |||||||| ||||| || ||||||||||||||||| | || || || Sbjct 36450 ATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAA 36391 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | | ||||| | ||||||| | | ||| ||| ||||| Sbjct 36390 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGC 36349 >seq2 Length=354893 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | || || ||| |||| |||||||| || ||||| ||| | ||||| | Sbjct 249891 TGTTCAATCGTCAGCCTTCATTGCACAAAATGTCAATCATGGCACATCGGGCGAAAGTCA 249832 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 | ||||| || ||||| || |||| ||||| ||| |||| |||||||| |||| Sbjct 249831 TGCCCTGGAGA-ACTTTTCGTTTCAATG--AGTGCGTTTGCTCGCCCTATAATGCCGATT 249775 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||||||| |||||||||||||| | || ||| || Sbjct 249774 TCGATGGAGACGAAATGAATATGCACCTGCCACAAACA 249737 >seq111 Length=72311 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || ||| | |||||||| ||||| || |||||||| ||| | || | | Sbjct 64225 GATTTGGTGTTATTTAATCGTCAACCATCTCTGCACAAGATGTCTATCATGTCCCACAGA 64166 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAA--GTGCTTGTACGCCTTAT 305440 ||||| || || |||| | |||||||| | || || ||| || | || || Sbjct 64165 GTCAAGGTCTTCCACTGG-TCCACATTTCGTCTCAACTTATCGGTGAC-GT-CTCCCTAC 64109 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||| |||||||||||||||||| ||||||| || || ||| Sbjct 64108 AATGCAGATTTCGATGGAGATGAAATGAATCTGCATGTTCCGCAGTCA 64061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186733485300576