Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq226 111 2e-19 seq271 95.1 1e-14 >seq226 Length=41712 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 ||||| |||||||| || | | || | ||| || | ||||| ||||| |||||| Sbjct 24117 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 24176 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 |||||||| || ||||| || || ||||| || |||||||| || || || || Sbjct 24177 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 24236 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | |||||||| ||||| || || ||||| || ||||| ||||| | || || |||||| Sbjct 24237 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 24296 Query 134706 ATTTGCATT 134714 || |||||| Sbjct 24297 ATCTGCATT 24305 >seq271 Length=35139 Score = 95.1 bits (104), Expect = 1e-14 Identities = 459/717 (64%), Gaps = 31/717 (4%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||| | || |||| | || ||||| | |||||| ||||| |||||||||||||| Sbjct 30387 GCCATTTTGGATAGTCAGATTGAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGT 30328 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || ||| |||||| || | || |||||| | | |||||||| ||| |||| Sbjct 30327 AATCGTAAATCCAATCAGCAGAATCTTGGAACCATTCGATCAAGCAATCTCTGCTGTGAA 30268 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TG 8408 || | ||||| | || | |||||||| || |||||| | || || | || Sbjct 30267 ATCATCGAGTACTCAGACTCCAAAGAAGTGGCAGTATGCAATTTGGCTTCCATCGCATTG 30208 Query 8409 TTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGC 8468 | ||| || || ||| ||| | || | | |||| | |||| | ||| Sbjct 30207 TCAAAA----TTTGTGTATCAG-----AAAGAATTTCAA-TTTGCAAAATT---ATACGA 30161 Query 8469 CGTG-CAAGTGACGGTACGCAA--TTTAGATCGCATCATTGATGTCAATTTTTATCCCTT 8525 | ||| || |||| || | | | ||||||||| |||||| |||||| | Sbjct 30160 AATCACAAAAATCGTTACGAAAAATCTCAACAAAATCATTGATCTCAATTATTATCCGAT 30101 Query 8526 GGAAGAAGCGCGCGT-ATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTC 8584 ||||| | || | | | || ||| || |||| |||| | ||||| ||||||| Sbjct 30100 TCCTGAAGCACAAGTGAGCAATCA-GCGACATCGACCGATTGGAATCGGCGTTCAAGGTC 30042 Query 8585 TGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCA 8644 | ||||| ||||| || || | || || | |||||| ||| || ||| ||||| Sbjct 30041 TTGCCGATACGTTTTTACTGATGAGTCTTCCATTTGAAAGCAAAGCTGCTCGCGAGCTCA 29982 Query 8645 ACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCC 8704 ||| | |||| |||||| |||||| || || | ||||| | || | || | Sbjct 29981 ACAAAGAAATTTTTGAAACGATGTATTTCGCGGCGATGGAAGCTTCCATGGAATTGGCAC 29922 Query 8705 GAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAAT 8764 | ||| | || ||||||| || || || || | || || || || || |||| Sbjct 29921 GGGAACTCGGACCGTACGAGAGCTATGCTGGATCACCAGTTAGTCGAGGTATCTTTCAAT 29862 Query 8765 ACGACATGTGGAATGTCACGCCCACCTCT--TTG-TGGAATTGGAGCGATTTGAAAC-GC 8820 || |||||| | |||| ||| || | | ||| |||||| | |||||| || Sbjct 29861 TTGATATGTGGCAGGTCATTCCCGATTCCGGTCGATGGGATTGGAAGCAGTTGAAAGAGC 29802 Query 8821 AA--AATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCA 8878 || | | |||| ||| | || || || || || | ||| ||||| |||||| Sbjct 29801 AAGTAGCTACTCA---CGGAATCCGAAACTCTTTGCTGCTCGCTCCGATGCCAACCGCCT 29745 Query 8879 CGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGT 8935 | || |||||||| | || || ||| || | ||||||||||| |||| ||| Sbjct 29744 CAACGGCTCAAATTCTCGGCAATTGCGAGTCTATCGAGCCGTTCACTTCCAACATGT 29688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505365448024320