Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 279 4e-70 seq68 152 4e-32 >seq23 Length=155023 Score = 279 bits (308), Expect = 4e-70 Identities = 629/919 (68%), Gaps = 36/919 (4%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 ||| ||| |||||||||| | |||||| | ||||| || ||| | ||| || || Sbjct 36954 TTTTCTTCGAGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTG 36895 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 | | ||||| || |||||| |||| |||||||| ||||||||| | |||||| | Sbjct 36894 GGACATGTATAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCA 36835 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTT 43852 ||| | | ||| || | || | | |||| |||| ||| ||||| || Sbjct 36834 TGACATGAATGACTGGCTT--AATATATCGGACAATGAAAGACACTTTATCAAACACGTG 36777 Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG 43912 ||||| || ||||| || || || || || |||||||||||| | | | | ||| | Sbjct 36776 TTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTCGCCA-TGAATTTCAG 36718 Query 43913 CAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || || ||||| | || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 36717 CAGTGAGGTTCAGATCCCCGAAGCTCGATGCTTTTACGGATTTCAAATTGCAATAGAAAA 36658 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || |||||| |||| | |||| ||||| |||||||||||| || || Sbjct 36657 TATACACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACTGAAAA 36598 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 || | || | ||||| |||||| | || |||| ||| |||||||| | |||| Sbjct 36597 ACAGCATTTACTGTGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGG 36539 Query 44091 CCCTTAAATGGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | |||||| || |||| || || |||| |||| || | || || ||||| | Sbjct 36538 CGTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGG 36479 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGA 44206 || ||||| || || || || ||||| || ||| | ||||||||| | ||||||||| Sbjct 36478 CCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGA 36420 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || ||||||||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 36419 GGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACAT 36360 Query 44267 TGCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG- 44323 || || ||||| || || |||| | | || | | ||||| |||| | | | Sbjct 36359 TGTGACTTTGCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGC 36306 Query 44324 ACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GC 44382 | ||| | || || || || || | || |||||||||||| | || | | | Sbjct 36305 TCTATTCATGCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTC 36247 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | | || || | |||| ||||||||| | ||||||| ||||| || || | | Sbjct 36246 ACTTCCAGTCGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGT 36187 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAAC 44497 || ||||| || | | ||| | ||| | | || ||||| | | || | Sbjct 36186 GGCGGATCGATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCACGCTTCTAATC 36131 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || ||||| | ||||| | ||||| || |||| ||||||||||||||||| |||||| Sbjct 36130 CC-TTTGACTGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGC 36072 Query 44558 GTTGGAGAATATCAGCGAA 44576 |||||||||||| ||||| Sbjct 36071 GTTGGAGAATAT--GCGAA 36055 >seq68 Length=93419 Score = 152 bits (168), Expect = 4e-32 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | ||| ||||| ||||| || || |||||||| || || Sbjct 72368 CGACGTATCATCTTATCCGCTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 72309 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| || | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 72308 TGTCATCTGATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 72249 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || ||||| || || || || || || | || Sbjct 72248 CGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATATTGCTAGCTACGCGCTTTTGACA 72189 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 72188 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 72129 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 72128 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 72069 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 72068 CCGTTTCCAACACT 72055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430733722080