Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq271 159 4e-34 seq23 158 2e-33 >seq271 Length=35139 Score = 159 bits (176), Expect = 4e-34 Identities = 675/1050 (64%), Gaps = 37/1050 (4%) Strand=Plus/Plus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--ACTTTCGC 111109 ||| || ||||||||||| || | ||||| |||| |||||| ||| |||| || Sbjct 30034 ATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGC 30093 Query 111110 G-CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| || |||||| |||| ||||||| | ||| |||||||| ||||| || Sbjct 30094 TTCAGG---AATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGAT 30150 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 ||||||||||| | | |||| || | | ||| | | | ||| || ||| | || Sbjct 30151 TTTTGTGATTTCGTATAATTTTGCAAATTGAAA--TTC---TTTCTG-ATACACAAATTT 30204 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || | ||||| || ||||||||||| || ||| || | |||| |||||| | Sbjct 30205 TGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGAT 30264 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 ||||| || | ||| || | ||| || || | ||||| || || || Sbjct 30265 GATTTCACAGCAGAGATTGCTTGATCG---AATGGTTCCAAGATTCTGCTGATTGGATTT 30321 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 30322 ACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAA 30381 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGCCTCG 111463 ||| || ||| | | |||| ||| | | || ||| | | |||| Sbjct 30382 AATGGCAAACCACAATTGCTGGGCTTTGACAGT--CTTTCGGGCAATGTTTTGAGACTCG 30439 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTC-CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 |||||| || | || ||||| || || |||| | || | || | ||| |||| Sbjct 30440 TACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTC-TCATAAAGTCGTGGAGCCTC 30498 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||||| || || || || ||||| || || || || Sbjct 30499 GTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGG 30558 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||| || | |||| | ||||| | ||| ||| | || || || || Sbjct 30559 GATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACG 30618 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 || || || ||||| | ||||||||||||||| ||||| ||||| | ||| | ||| || Sbjct 30619 TAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCC 30678 Query 111703 CTTTCGACGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 || || |||| | ||||| || || || |||||| | || || || |||||||| Sbjct 30679 TTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCAT 30738 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 ||||| ||| |||| || ||||| ||||| |||||| | || ||| | | Sbjct 30739 TGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAAT 30798 Query 111820 ATCATGGATGTGC--ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 || |||| | | | |||||||| |||||||||||||| || |||||| | | Sbjct 30799 AT--TGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTC 30856 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || |||| ||| || || || | ||| | || || || || Sbjct 30857 AGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGAT 30916 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATA 111994 | || |||| || || || |||||||| || || || ||||| || || |||| | Sbjct 30917 AATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTT- 30975 Query 111995 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||| | || || || ||||| || | || | | || ||| |||||| Sbjct 30976 --TTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCG 31033 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGG 112084 | || || ||||| | ||| | |||||| Sbjct 31034 ACAGCCACTCGCATTATCATATGTTGTGGG 31063 >seq23 Length=155023 Score = 158 bits (174), Expect = 2e-33 Identities = 307/449 (68%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || ||||| || || || |||||||| ||||| || || ||||| | || Sbjct 36361 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 36420 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||||| |||| | |||| ||||||||| |||||||| ||||| || || || | Sbjct 36421 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 36480 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| || | | | ||| || || ||| | |||||| ||| ||||||||| ||| Sbjct 36481 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 36540 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 |||| || || || || || || | |||| || || | ||| |||| ||| Sbjct 36541 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGCTGTTTT 36600 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 122970 |||| | ||| || |||||| | ||||||||| ||||| ||| || | || Sbjct 36601 TCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTT 36660 Query 122971 TCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || ||| ||| |||| || |||| || | || |||||| |||||||||||| | | Sbjct 36661 TC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CTG 36717 Query 123029 C-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 | ||||| | || ||| ||| ||||||||||| | |||||||| |||| Sbjct 36718 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 36777 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTC 123116 | || || || || | ||||||| || Sbjct 36778 ACGTGTTTGATAAAGTGTCTTTCATTGTC 36806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627991052313600