Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq23 114 2e-20 seq271 100 4e-16 >seq23 Length=155023 Score = 114 bits (126), Expect = 2e-20 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 36361 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 36420 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 36421 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 36480 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 36481 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 36540 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 130266 || || || || || | ||||||| || | ||||| || || | | || || Sbjct 36541 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 36599 Query 130267 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT 130326 ||| | ||||||||||||||| |||| || | | ||||| ||| || | | Sbjct 36600 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 36659 Query 130327 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| || Sbjct 36660 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CT 36716 Query 130385 GC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATC 130422 || ||||| | || ||| ||| ||||||||||| Sbjct 36717 GCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 36755 >seq271 Length=35139 Score = 100 bits (110), Expect = 4e-16 Identities = 314/482 (65%), Gaps = 7/482 (1%) Strand=Plus/Plus Query 119028 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 119087 || || || || ||||| || || || |||||||| || || | || | ||| ||| Sbjct 30530 TCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCT 30589 Query 119088 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 119147 ||| ||||| || ||||| ||| | |||| ||| || | ||||||||||||| Sbjct 30590 CGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGC 30649 Query 119148 CACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATAC 119204 || || || || || | || | ||||| || || | ||| | || | || || Sbjct 30650 CAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTAT 30709 Query 119205 CTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTC 119264 | || ||| | || || || ||||||||||||| || |||| || ||||| ||| Sbjct 30710 CGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTC 30769 Query 119265 CCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC--ATACCAATACCCCCTG 119322 || |||||| | || ||| | || || |||| | | | |||||||| || | Sbjct 30770 CCGCGAATATAACTGTTGGTGGAGC-GA-ATATTGGAAATACTGACGCCAATACCGCCAG 30827 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 |||||||||| || ||| || | | || || |||| || || ||||| || ||| Sbjct 30828 CCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCAT 30887 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | | | | | || || || ||| | ||| || | || || || || ||||| | Sbjct 30888 CTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAA 30947 Query 119443 GAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGG 119502 | || || || || || | || | ||| ||||| | || || || ||||| |||| Sbjct 30948 GCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGG 31007 Query 119503 CG 119504 || Sbjct 31008 CG 31009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618394878024960