Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq271 154 2e-32 >seq271 Length=35139 Score = 154 bits (170), Expect = 2e-32 Identities = 631/982 (64%), Gaps = 41/982 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| | ||| | ||||| ||||| |||| || || || | | || | || Sbjct 31063 CCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGT 31004 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 ||||| || || || | ||||| ||| | |||| || || ||||| || || || Sbjct 31003 TTTGGAAACGTATGAACACATGTCACAA---AAGTTCTTTACGCATGCAACTCCGACGCT 30947 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||||| || || || |||||||| | || || || || | ||| | || Sbjct 30946 TTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGA 30887 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 || || ||| |||| || || | || || | | |||||| || ||||||||||| Sbjct 30886 TGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGC 30827 Query 104458 TGGGGGTATTGGGAT--GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||| |||||||| | | | |||| || | | ||| || | |||||| ||| Sbjct 30826 TGGCGGTATTGGCGTCAGTATTTCCA--ATATTCGCTCCACCAACAGTTATATTCGCGGG 30769 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| || |||| ||| ||||||||||||| || || || | |||||| || Sbjct 30768 ACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGA 30709 Query 104576 TATGTAAATCAA---GCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || ||||| | |||| || || || ||| | ||| | ||||| ||||| ||| Sbjct 30708 TACGTTGATCAAGGCGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGG 30649 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 |||||||||||| | ||||| || || | ||| || || || | || || Sbjct 30648 CACGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACTCCATCGA 30589 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||| | || | ||||| ||||| || ||||| || ||||| | || || || Sbjct 30588 GCTCGAGATTTGTTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGAC 30529 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | ||| | | || ||||| || |||| || | || | || | | |||| Sbjct 30528 AACCAAGAATGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGA-GACATGGGG 30470 Query 104813 GAG-GAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAGAAGGTCGGGCGACTGCGACG 104869 || || ||||| || | || |||||||||| | || | | ||| ||| Sbjct 30469 AAGCGAATTTGATGCGTTATATGAAAAGTACGAGTCTCAAAACATTGCCCGA--AAGACT 30412 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || ||| | ||||| || ||| | | ||| | ||||| || || || Sbjct 30411 GTCAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAACGCCG 30352 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGG----GTG 104984 || ||||||||||||||||| ||||| | || ||||| ||||| |||| | Sbjct 30351 TATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAACCATT 30292 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGA---CAAAGATGAGA 105041 ||||||| ||||||||| |||||| | || | |||| |||||| | Sbjct 30291 CGATCAAG-----CAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAG--- 30240 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 ||| || || || | || || ||||| | | || | |||| ||| | ||||| Sbjct 30239 TGGCAGTATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATC-----AGAAAGA 30185 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 |||| | | || |||| | ||||| | || |||| || || ||||| || |||| | Sbjct 30184 -ATTTCAATTTGCAAAATTATACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAA 30126 Query 105162 TTATTGATAGAAATTTTTACCC 105183 | |||||| |||| ||| || Sbjct 30125 TCATTGATCTCAATTATTATCC 30104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222771395840