Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq226 134 2e-26 seq1 102 9e-17 seq271 91.5 2e-13 >seq226 Length=41712 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 24305 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 24246 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| ||||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 24245 CGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 24186 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || ||| | ||||| | || || || || || || || Sbjct 24185 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 24126 Query 27585 TGTCCAAAA 27593 ||||||| Sbjct 24125 CATCCAAAA 24117 >seq1 Length=398508 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || ||||| || || || || |||| || | |||| ||| | ||| || Sbjct 11375 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 11316 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||| Sbjct 11315 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 11256 Query 27553 CTCGAGGATGATCGTACCCTA 27573 || || || | |||||| ||| Sbjct 11255 CTTGAAGACGGTCGTACTCTA 11235 >seq271 Length=35139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 80014 TGAATTGGCTTG-----GCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGC 80068 |||||||| ||| || ||| || || || ||||||||||| || |||||||| | Sbjct 29310 TGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGTCTTGAGAC 29369 Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGA 80128 | || ||||| |||| | ||||| ||| |||| || | || |||| | ||| Sbjct 29370 CTTTTTTCCATGCGTAGAAATGCATCGAAGTGAGTTTACTGACAGTCGGGTCGGCAATGT 29429 Query 80129 AGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 || || || || ||| |||||| ||| | || || ||||| || ||||| || | || Sbjct 29430 GAATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAA 29489 Query 80189 TTGACTTTTGTGGAATTTCCCATACTGT 80216 | | |||||| |||||||| ||||| Sbjct 29490 TCGCCTTTTGCTTGATTTCCCAAACTGT 29517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570273215761920