Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq226 127 2e-24 seq1 82.4 7e-11 >seq226 Length=41712 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || |||||||| || ||| | ||| Sbjct 24304 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 24245 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||||||||| ||||| || || ||||| ||| Sbjct 24244 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 24185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 |||||||| || | ||| || ||||||||||| ||| | ||| || | || ||||||| Sbjct 24184 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGC-CGAACGCTCGCGGATTACAA 24126 Query 27167 CATTCAAAA 27175 ||| ||||| Sbjct 24125 CATCCAAAA 24117 >seq1 Length=398508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| || ||||| ||| | | ||| ||||||| | ||||| || ||||||||| Sbjct 11366 ATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAGATTCAAGAC 11307 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || || ||||| ||| |||| | ||||| |||||| | |||||| Sbjct 11306 AAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAACTTGAAGAC 11247 Query 27144 AGT 27146 || Sbjct 11246 GGT 11244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434890043320320