Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq271 329 4e-85 seq23 279 7e-70 >seq271 Length=35139 Score = 329 bits (364), Expect = 4e-85 Identities = 1440/2253 (64%), Gaps = 54/2253 (2%) Strand=Plus/Plus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 ||| || ||||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 29338 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 29397 Query 76871 TGTCAGTTTGGAATAAC--TAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCG 76928 || ||||| | | || | || ||||| || |||||||| | || ||||| ||| Sbjct 29398 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 29455 Query 76929 ATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATA 76988 ||| | ||||||| ||| || ||||| | | ||| | |||||| |||||||||| Sbjct 29456 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 29515 Query 76989 GTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCA 77045 |||||| | || ||| | || | |||| | | ||||||| | |||||| | | Sbjct 29516 GTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGA 29575 Query 77046 TCTGATATAATTGTATTCTTTATATCATCAT-TCCACAATTTCCTCTCTGTTAAAACTCT 77104 || | ||| |||| | || | || ||||||| ||| |||| | || |||| Sbjct 29576 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 29632 Query 77105 A--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 77162 | ||||| || || ||| ||||||||||| | || | ||| || | || Sbjct 29633 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 29692 Query 77163 TTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTT 77222 || || | || || | ||| || || || | ||||||||| || || || ||| Sbjct 29693 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 29752 Query 77223 GGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGA 77282 ||||| || || | || ||| |||| || || || || | || ||||| | Sbjct 29753 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 29812 Query 77283 TATTTCCAATCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | ||||||||||| || | ||| || | || | ||| | ||| |||| | || Sbjct 29813 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 29872 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG--CTAGTT 77397 || |||| | ||||||| ||| | || || ||||| ||| | | | | || Sbjct 29873 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGA--GTTCCCGTGCCAATT 29930 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 | ||||||| || || |||| || ||||| ||||| | || ||||| || Sbjct 29931 CCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGC 29990 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 | || | | || ||||| ||| | | || | ||| | ||| || | || |||| Sbjct 29991 GAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAA 30050 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | || || ||||| |||| ||||| || |||| | || ||||| ||||| ||||||| Sbjct 30051 CGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAAT 30110 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 |||| | || || ||||| ||||||||| | ||| | ||| | || | || || Sbjct 30111 AATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATT 30170 Query 77638 TAAGAAAATCAAATCTTCCATCTATAACAAACATGTT--CAAAGCTATAGATGCTAGATT 77695 | ||| | |||| || ||| ||| | || || ||| || || || || | ||| Sbjct 30171 TTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAAATT 30228 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || ||||| || || || | || | || | || || || || ||||| || | Sbjct 30229 GCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGA 30288 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 | || || || ||||| || || ||| || ||| || | ||| || ||||| || Sbjct 30289 TCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCAT 30348 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | |||| || ||||| |||||||| || | ||| | || || || | ||| Sbjct 30349 ATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTGCTGG 30403 Query 77876 --TATCATAGATTTGTATCGC-CTCTCTCTT-----TCATATTGAGTATATAGCCGTTCA 77927 | | | || || ||| | | | || || || | ||||| | ||| Sbjct 30404 GCTTTGACAGTCTT---TCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCA 30460 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 ||||| |||||| |||| | || || || || || || | || ||| Sbjct 30461 AATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCAT 30520 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 || | || | || ||||||||||| ||||| || ||||| |||||| ||| | | Sbjct 30521 TCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAA 30580 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 ||||| | || ||| ||||||||| |||||| || || |||||||| | ||| Sbjct 30581 TCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATA 30640 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 || | ||||| || |||||||| ||||| | | || || || ||| || ||| Sbjct 30641 TCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGA 30700 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | |||| || |||| ||| | || | | |||||||| ||| || || || || Sbjct 30701 TCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTT 30760 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATT 78287 ||||| || || ||||||||| | | ||||||||| ||| | || || Sbjct 30761 CCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATA 30820 Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || || ||| ||| || || || || |||||| || ||||| || || || ||| Sbjct 30821 CCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATA 30880 Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 ||||| |||| | |||||||| || | ||| | || ||||| ||| Sbjct 30881 GAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCA 30940 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 || || | ||||||| |||||||||||| | |||| || | | | || ||||| Sbjct 30941 TTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 31000 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 | | | | || | | | || || || || || || || ||||| | |||||| || Sbjct 31001 AAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTTGT 31060 Query 78528 GGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 78587 || | |||| | || ||| | ||||| || ||||| |||| ||||||||| Sbjct 31061 GGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAG 31120 Query 78588 CCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTG 78647 |||||||||| ||| ||||||||| || ||||| | ||||| || |||||| Sbjct 31121 CCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAGAGCTTCTTTG 31180 Query 78648 TATTTGGTAACAATATCCATG-ACAGTAGTTG--AAATAATAGGAGATCGTACACCATT- 78703 | | ||||||| || ||| ||| | |||| | |||| |||| |||| | Sbjct 31181 TTCTCCATAACAAT-TCGATGCACA-TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTG 31237 Query 78704 -TTTAG-GATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTT 78761 ||| | | ||| | || |||||| || || ||||| || | ||| ||||| Sbjct 31238 GTTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGTA 31294 Query 78762 TCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGT 78821 | || |||| ||| || | ||| |||| ||||| | | | |||| ||||||||| Sbjct 31295 TTTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGT 31354 Query 78822 GTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881 || | || ||||| ||||||| || || || || || || ||||| || Sbjct 31355 GTGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGCCC 31414 Query 78882 TTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTC 78941 ||| | || ||| |||||| | |||| ||| ||||| || | || ||||| Sbjct 31415 GGATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGTTT 31474 Query 78942 AATCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTTG 79001 || || || | |||| | || || | |||||||| || ||| | || || || Sbjct 31475 AAGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTTTT 31534 Query 79002 CATCCATTTCGTTTAATAACGAACATCGTTTGG 79034 | ||| | ||||| || || |||| ||||| Sbjct 31535 CGTCCGTCACGTTTGATGACATACAT--TTTGG 31565 >seq23 Length=155023 Score = 279 bits (308), Expect = 7e-70 Identities = 620/910 (68%), Gaps = 23/910 (3%) Strand=Plus/Plus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 |||||| || || |||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 36060 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 36119 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTC-TGAAATCAGTC 47973 | ||||| |||||| || | ||| | || | | || | | | || || || || Sbjct 36120 CCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATC 36178 Query 47974 TATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 48033 ||| || || || || || ||| ||||| |||||||||| || || | | Sbjct 36179 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 36238 Query 48034 CTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-A 48091 |||| || | || |||| ||| ||||||||||| | || || || || || | | Sbjct 36239 CTGGAAGTGAATCTCGTAC-AAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA 36297 Query 48092 TGT-TACCGTTTCCTCACTTGGTGGATACA-ACAAATGTTTAA-ACATTAAACATGCAAA 48148 || || | ||| || | | || || | | | | |||| | ||||||||| Sbjct 36298 TGAATAGAG---CCTT-CTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 36353 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 |||||||| || |||||||| | ||| || | || || ||||| || || ||||| Sbjct 36354 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 36413 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 | ||| ||||| || ||||||||||| | ||| ||||| || || || || ||||| Sbjct 36414 CAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTC 36473 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC-CACCGTT 48327 ||||||||||| || | ||| ||| | | ||| | || || ||| |||| || Sbjct 36474 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATT 36532 Query 48328 GT---GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 ||||| | || || || | || || || |||||||| || || | || || Sbjct 36533 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGC-ACAGTAAA 36591 Query 48385 AGtt-tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 | | ||||||| | |||||| | ||| ||||| || || | ||||| ||| ||| Sbjct 36592 TGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 36651 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || |||||||| ||||| || |||||||||||||| |||| ||||| | |||||| ||| Sbjct 36652 TGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACC 36711 Query 48504 TCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | | || |||| || | ||| ||||| || ||||||||||| || ||||| | Sbjct 36712 TCACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGA 36769 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || || || ||||| ||||| | | |||| ||| | | ||| ||||||||| | Sbjct 36770 AGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCA 36829 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 | || | | ||| | |||||| || |||||||| |||||||||||| ||||||| Sbjct 36830 TGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACA 36889 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAA 48741 | | ||| || ||| | ||| || || || | ||||| | || ||||||| | || Sbjct 36890 TGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAA 36949 Query 48742 GGATAGGTTC 48751 | | |||||| Sbjct 36950 GAAAAGGTTC 36959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694623507594240